Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RYQ61_RS02740 Genome accession   NZ_CP136799
Coordinates   550988..552403 (-) Length   471 a.a.
NCBI ID   WP_102568336.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 545988..557403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02715 (RYQ61_02715) - 546117..546797 (-) 681 WP_021003268.1 rhomboid family intramembrane serine protease -
  RYQ61_RS02720 (RYQ61_02720) - 546790..547317 (-) 528 WP_102568333.1 5-formyltetrahydrofolate cyclo-ligase -
  RYQ61_RS02725 (RYQ61_02725) - 547363..548493 (-) 1131 WP_317289740.1 N-acetyldiaminopimelate deacetylase -
  RYQ61_RS02730 (RYQ61_02730) dapD 548506..549204 (-) 699 WP_102568335.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RYQ61_RS02735 (RYQ61_02735) gltX 549322..550779 (-) 1458 WP_102568359.1 glutamate--tRNA ligase -
  RYQ61_RS02740 (RYQ61_02740) radA 550988..552403 (-) 1416 WP_102568336.1 DNA repair protein RadA Machinery gene
  RYQ61_RS02745 (RYQ61_02745) - 552361..552831 (-) 471 WP_102568337.1 cysteine hydrolase family protein -
  RYQ61_RS02750 (RYQ61_02750) - 552841..553284 (-) 444 WP_102568338.1 dUTP diphosphatase -
  RYQ61_RS02755 (RYQ61_02755) - 553411..553899 (-) 489 WP_102568360.1 hypothetical protein -
  RYQ61_RS02760 (RYQ61_02760) - 553899..555452 (-) 1554 WP_102568339.1 polymorphic toxin type 44 domain-containing protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51691.26 Da        Isoelectric Point: 6.7134

>NTDB_id=892711 RYQ61_RS02740 WP_102568336.1 550988..552403(-) (radA) [Streptococcus intermedius strain XH2169]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVGEVLKKVFDEVNKN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=892711 RYQ61_RS02740 WP_102568336.1 550988..552403(-) (radA) [Streptococcus intermedius strain XH2169]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCCAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAGGTA
CAAGCCCTAGTAACACCGACTGTCTTTGGGAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTTGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTGGTGAGGTTTTGAAAAAGGTGTTTGACGAAGTAAATAAAAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

95.966

0.856
  radA Streptococcus pneumoniae D39

89.159

95.966

0.856
  radA Streptococcus pneumoniae R6

89.159

95.966

0.856
  radA Streptococcus pneumoniae TIGR4

89.159

95.966

0.856
  radA Streptococcus mitis SK321

89.159

95.966

0.856
  radA Streptococcus mitis NCTC 12261

88.938

95.966

0.854
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

96.178

0.597