Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU56_RS00730 Genome accession   NZ_AP024900
Coordinates   157911..158915 (-) Length   334 a.a.
NCBI ID   WP_261873705.1    Uniprot ID   -
Organism   Vibrio rarus strain LMG 23674     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 152911..163915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU56_RS00710 - 153978..155144 (+) 1167 WP_261873701.1 nucleotide sugar dehydrogenase -
  OCU56_RS00715 hslU 155270..156604 (-) 1335 WP_261873702.1 HslU--HslV peptidase ATPase subunit -
  OCU56_RS00720 hslV 156614..157138 (-) 525 WP_261873703.1 ATP-dependent protease subunit HslV -
  OCU56_RS00725 - 157289..157843 (-) 555 WP_261873704.1 SPOR domain-containing protein -
  OCU56_RS00730 cytR 157911..158915 (-) 1005 WP_261873705.1 DNA-binding transcriptional regulator CytR Regulator
  OCU56_RS00735 priA 159107..161308 (-) 2202 WP_261873706.1 primosomal protein N' -
  OCU56_RS00740 rpmE 161607..161825 (+) 219 WP_261873707.1 50S ribosomal protein L31 -
  OCU56_RS00745 - 162020..163285 (+) 1266 WP_261873708.1 malic enzyme-like NAD(P)-binding protein -
  OCU56_RS00750 metJ 163380..163697 (-) 318 WP_261873709.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36703.87 Da        Isoelectric Point: 4.9549

>NTDB_id=89271 OCU56_RS00730 WP_261873705.1 157911..158915(-) (cytR) [Vibrio rarus strain LMG 23674]
MATMKDVAELAGVSTATVSRALMNPEKVSSSTRKRVEDAVIESGYYPSTIMRSMKRNESKTLVVIVPNLCDPYFSEIIRG
IEAAASEQGYLVLHGDSSQQKCRDDSLVNLVYSKQADGLILLGTDLPIDASKAEQRNLPPMVMACEYAPELELPTVHIDN
LTASFQAVNYLAKLGHRRIGEISGPANAPLSSFRSQGFQQALRRAGLNIDLTNTAMGDFTFESGAIAFRKLMNVGSPPSA
IFCHNDMMAIGAIKEAKNMGLRVPQDISFIGFDNIEFSEYCEPPLTTVSQPRYDIGYQATLMLFERLNGNEISSDSRLLE
TELIIRQSTLPPSY

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89271 OCU56_RS00730 WP_261873705.1 157911..158915(-) (cytR) [Vibrio rarus strain LMG 23674]
ATGGCGACAATGAAAGATGTTGCTGAACTGGCTGGTGTGTCAACAGCAACGGTTTCTAGAGCCCTAATGAATCCTGAAAA
AGTCTCGTCTTCGACCCGTAAACGCGTTGAAGATGCAGTGATTGAATCAGGGTACTATCCAAGCACAATCATGCGCAGTA
TGAAGCGCAACGAATCAAAAACCTTGGTTGTGATTGTGCCCAATCTTTGTGACCCCTATTTTTCGGAAATTATTCGCGGT
ATTGAAGCGGCGGCATCAGAACAAGGTTATCTTGTGTTACATGGCGATAGCTCTCAGCAAAAGTGTCGTGATGACTCATT
AGTCAACTTAGTCTACTCAAAACAAGCCGATGGCCTTATCTTGCTCGGCACCGACCTGCCTATTGATGCAAGTAAAGCAG
AGCAACGCAACCTTCCTCCTATGGTAATGGCCTGTGAATACGCACCCGAACTGGAATTACCCACAGTACACATTGATAAC
CTGACCGCTTCTTTTCAGGCTGTTAATTACCTGGCTAAATTGGGTCATAGACGTATTGGGGAAATTAGCGGGCCGGCAAA
TGCCCCTTTGTCCAGTTTTCGCAGTCAAGGATTCCAACAAGCATTACGGCGCGCTGGGCTAAATATTGACCTCACCAATA
CTGCAATGGGCGATTTCACGTTTGAATCAGGGGCCATCGCTTTTCGAAAGCTCATGAATGTGGGCTCACCACCTAGCGCG
ATTTTTTGCCATAACGATATGATGGCGATTGGTGCAATCAAAGAAGCCAAAAATATGGGGCTTCGCGTTCCACAAGACAT
TTCCTTTATCGGCTTCGATAATATAGAGTTTTCTGAATACTGCGAACCACCACTGACAACCGTCTCTCAGCCTAGGTATG
ATATAGGTTATCAAGCAACCTTAATGTTGTTTGAACGCCTAAATGGTAACGAGATAAGCTCTGATTCTCGACTTCTAGAG
ACGGAGCTAATCATAAGACAAAGTACCCTACCGCCTAGCTATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

69.67

99.701

0.695
  cytR Vibrio parahaemolyticus RIMD 2210633

69.277

99.401

0.689

Multiple sequence alignment