Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RYQ61_RS01760 Genome accession   NZ_CP136799
Coordinates   331573..333339 (-) Length   588 a.a.
NCBI ID   WP_317289736.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 326573..338339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01745 (RYQ61_01745) - 327779..329176 (+) 1398 WP_020999087.1 glycoside hydrolase family 1 protein -
  RYQ61_RS01750 (RYQ61_01750) - 329325..329738 (-) 414 WP_102568249.1 cupin domain-containing protein -
  RYQ61_RS01755 (RYQ61_01755) rcrQ 329823..331583 (-) 1761 WP_102568250.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01760 (RYQ61_01760) rcrP 331573..333339 (-) 1767 WP_317289736.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01765 (RYQ61_01765) - 333332..333790 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator -
  RYQ61_RS01770 (RYQ61_01770) - 333962..335149 (-) 1188 WP_102568252.1 NADH-dependent flavin oxidoreductase -
  RYQ61_RS01775 (RYQ61_01775) - 335416..335826 (-) 411 WP_102568253.1 peptide deformylase -
  RYQ61_RS01780 (RYQ61_01780) scrK 335892..336791 (-) 900 WP_003074417.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65436.14 Da        Isoelectric Point: 6.1179

>NTDB_id=892693 RYQ61_RS01760 WP_317289736.1 331573..333339(-) (rcrP) [Streptococcus intermedius strain XH2169]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTRGTVISDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGLRVVRAYNAEDYQDDKFAGANDEVTRLNLFVNRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALSERLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQPKTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLTQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAEKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLETNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=892693 RYQ61_RS01760 WP_317289736.1 331573..333339(-) (rcrP) [Streptococcus intermedius strain XH2169]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTGTTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTTCTACAGACGAGAGGAACAGTTATTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATTATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGATTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGCTTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAATCGGCTCATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTATCAGAACGCTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGTATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAACCAAAAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTCATTGAACATGTTAGCTTTACGGCTAAAGCGGGCGAAACGGTGGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGACTTTGGACAAAGCAATGAAAGTCCGTTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGACACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTTGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGCTGGCGATTGCACGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGGAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGACAAGGGACT
CACAAAGAGCTACTAGAGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(16-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70

100

0.714