Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RYQ61_RS01755 Genome accession   NZ_CP136799
Coordinates   329823..331583 (-) Length   586 a.a.
NCBI ID   WP_102568250.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 324823..336583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01735 (RYQ61_01735) - 325609..326334 (-) 726 WP_037582803.1 GntR family transcriptional regulator -
  RYQ61_RS01740 (RYQ61_01740) celB 326368..327636 (-) 1269 WP_020999086.1 PTS cellobiose transporter subunit IIC -
  RYQ61_RS01745 (RYQ61_01745) - 327779..329176 (+) 1398 WP_020999087.1 glycoside hydrolase family 1 protein -
  RYQ61_RS01750 (RYQ61_01750) - 329325..329738 (-) 414 WP_102568249.1 cupin domain-containing protein -
  RYQ61_RS01755 (RYQ61_01755) rcrQ 329823..331583 (-) 1761 WP_102568250.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01760 (RYQ61_01760) rcrP 331573..333339 (-) 1767 WP_317289736.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01765 (RYQ61_01765) - 333332..333790 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator -
  RYQ61_RS01770 (RYQ61_01770) - 333962..335149 (-) 1188 WP_102568252.1 NADH-dependent flavin oxidoreductase -
  RYQ61_RS01775 (RYQ61_01775) - 335416..335826 (-) 411 WP_102568253.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65199.37 Da        Isoelectric Point: 6.1994

>NTDB_id=892692 RYQ61_RS01755 WP_102568250.1 329823..331583(-) (rcrQ) [Streptococcus intermedius strain XH2169]
MENKKSSLFSQVEPYIKGFQFPLLVAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYVVGAV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTKLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLATLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=892692 RYQ61_RS01755 WP_102568250.1 329823..331583(-) (rcrQ) [Streptococcus intermedius strain XH2169]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGGAACCCTATATCAAAGGATTCCAGTTTCCCTTGCTCGTTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCTATCTCTAACATTGCTCTTTTCTTAGCAGTTTTATATGTGGTGGGTGCTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCGCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACAAAGCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCGCAACTTTAAAGGGGGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATAGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCGTCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.821

99.317

0.713