Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R1Z03_RS04860 Genome accession   NZ_CP136797
Coordinates   1040062..1041441 (+) Length   459 a.a.
NCBI ID   WP_284394641.1    Uniprot ID   -
Organism   Acidovorax sp. BLS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035062..1046441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Z03_RS04840 (R1Z03_04840) - 1035970..1037562 (+) 1593 WP_317357344.1 ABC transporter substrate-binding protein -
  R1Z03_RS04845 (R1Z03_04845) - 1037688..1038296 (-) 609 WP_284430302.1 glutathione S-transferase family protein -
  R1Z03_RS04850 (R1Z03_04850) - 1038432..1039409 (-) 978 WP_284410538.1 2-dehydropantoate 2-reductase -
  R1Z03_RS04855 (R1Z03_04855) - 1039520..1039834 (-) 315 WP_317357347.1 hypothetical protein -
  R1Z03_RS04860 (R1Z03_04860) radA 1040062..1041441 (+) 1380 WP_284394641.1 DNA repair protein RadA Machinery gene
  R1Z03_RS04865 (R1Z03_04865) - 1041524..1041973 (+) 450 WP_272565926.1 glycerate kinase -
  R1Z03_RS04870 (R1Z03_04870) - 1042016..1042954 (+) 939 WP_272565924.1 branched-chain amino acid transaminase -
  R1Z03_RS04875 (R1Z03_04875) - 1042960..1043166 (+) 207 WP_272549760.1 zinc-finger domain-containing protein -
  R1Z03_RS04880 (R1Z03_04880) - 1043170..1043970 (+) 801 WP_284405764.1 glycosyltransferase family 2 protein -
  R1Z03_RS04885 (R1Z03_04885) - 1043967..1045283 (+) 1317 WP_317357354.1 O-antigen ligase family protein -
  R1Z03_RS04890 (R1Z03_04890) - 1045303..1046277 (+) 975 WP_272565920.1 glycosyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48088.58 Da        Isoelectric Point: 6.7602

>NTDB_id=892662 R1Z03_RS04860 WP_284394641.1 1040062..1041441(+) (radA) [Acidovorax sp. BLS4]
MAKEKTLFTCSECGGTSPRWLGKCPACGAWNTLVETVAEAGPGKNRLSAPQFSGLAQAQAVMPLAAIEATDIARTPSGID
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRVGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATIDATQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGVTIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDEG
GPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPRGFIAFGEVGL
AGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGITIHAVERVEEAMEVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=892662 R1Z03_RS04860 WP_284394641.1 1040062..1041441(+) (radA) [Acidovorax sp. BLS4]
ATGGCCAAAGAAAAAACCCTCTTCACCTGCTCCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCCTG
CGGTGCCTGGAACACCCTGGTCGAAACCGTGGCCGAGGCCGGCCCGGGCAAGAACCGCCTCAGCGCGCCGCAGTTCTCGG
GCCTGGCCCAGGCCCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGACATCGCCCGCACGCCGAGCGGCATCGAC
GAGCTGGACCGGGTGCTGGGCGGGGGCATCGTGGAGGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTC
CACGCTGCTGCTGCAGGCGCTGGATGCGCTGCAGCGCGTGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAAAGCGGCG
CCCAGGTGGCGCTGCGCTCGCGCCGCCTGGGCCTGGACCACAGCCAGGTGAACGTGCTGGCCGAGATCCAGCTGGAAAAA
ATCCTCGCCACCATCGATGCCACCCAGCCGGCCGTGGCGGTGATCGACTCGATCCAGACGGTGTACTCCGACCAGCTCAC
GAGCGCCCCCGGGTCGGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTCACGCGGGCGGCCAAGGCCTCGGGCGTGACCA
TCATCCTCGTGGGCCACGTCACCAAGGAGGGGGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTG
TACTTCGAAGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGG
CGTGTTCGCCATGACGGAAAAGGGCCTCAAGGGCGTGACCAACCCGAGCGCCATCTTCCTGAGCCAGCACAGCGAGCCCG
TGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACGAGGGC
GGCCCCAGTCCGCGCCGGCTGTCGGTGGGGCTGGACCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCATGC
CGGCGTGGCCTGCATGGACCAGGACGTGTTCGTGAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGACCTGG
CGGTGATGCTGTCCATCACCTCCAGCCTGCGCGGCAAAGCACTCCCCCGCGGGTTCATCGCCTTCGGCGAAGTGGGCCTG
GCCGGCGAGGTGCGCCCGGCCCCGCGCGGGCAGGAGCGGCTCAAGGAGGCGGCCAAGCTGGGCTTCAGCGTGGCCGTGGT
GCCCAAGGCCAATGCGCCCAAGAAGCCCATCGAGGGCATCACCATCCATGCGGTGGAGCGGGTGGAGGAGGCGATGGAGG
TGGTGCGCGGCATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.497
  radA Streptococcus mitis NCTC 12261

46.053

99.346

0.458
  radA Streptococcus mitis SK321

46.053

99.346

0.458
  radA Streptococcus pneumoniae TIGR4

46.861

97.168

0.455
  radA Streptococcus pneumoniae D39

46.861

97.168

0.455
  radA Streptococcus pneumoniae Rx1

46.861

97.168

0.455
  radA Streptococcus pneumoniae R6

46.861

97.168

0.455