Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV11_RS19120 Genome accession   NZ_AP024896
Coordinates   554054..555151 (+) Length   365 a.a.
NCBI ID   WP_373332847.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 549054..560151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS19085 tnpA 549629..550090 (+) 462 WP_261893050.1 IS200/IS605 family transposase -
  OCV11_RS19090 - 550255..550503 (-) 249 WP_261897605.1 YgjV family protein -
  OCV11_RS19095 - 550887..551201 (-) 315 WP_261897606.1 DUF496 family protein -
  OCV11_RS19100 - 551390..551596 (+) 207 WP_261897607.1 hypothetical protein -
  OCV11_RS19105 - 551618..552274 (+) 657 WP_261897608.1 YceH family protein -
  OCV11_RS19110 - 552278..552586 (+) 309 WP_261897609.1 GIY-YIG nuclease family protein -
  OCV11_RS19115 - 552675..553823 (+) 1149 WP_261897610.1 conjugal transfer protein TraF -
  OCV11_RS19120 luxP 554054..555151 (+) 1098 WP_373332847.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV11_RS19125 luxQ 555166..557730 (+) 2565 WP_261897612.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  OCV11_RS19130 - 557744..558268 (-) 525 WP_261897613.1 hypothetical protein -
  OCV11_RS19135 - 558419..558787 (-) 369 WP_261897614.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41997.28 Da        Isoelectric Point: 9.2502

>NTDB_id=89266 OCV11_RS19120 WP_373332847.1 554054..555151(+) (luxP) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MKRTTTIFLFLLAIIPQLAEASQVLKGYWHYREFLSRNPEQQMLTDKMVNTVRRDPVPLTVKQTRPITISVVFPGQQISD
YWVRNIKAFELRMQELGIQYQLNQVFTRPNVDARELSLSLMEAIKSNSDYVIFTLDTTRHRKFIEHVLQSSKTKLILQNI
TTPIKAWDKRQPMMYVGFDHELGTYRLLDYYRSLEPMGSEYSVLYYSEGYISAARGDTFIQSMETLGRYRLASSYYTKAT
EASGYEATLNIVKNDPKVKFIYACSTDIALGAIKALKELKRQDIIINGWGGGSAELKAIAKGDMAVTVMRMNDDTGVAMA
EAVKWDLEDKPVPTVYSGDFEVVTKDDSPERVKRLEKWAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=89266 OCV11_RS19120 WP_373332847.1 554054..555151(+) (luxP) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATAAAACGCACAACCACCATTTTTCTATTTCTCTTGGCCATTATTCCTCAGCTTGCGGAAGCATCCCAAGTGCTTAAAGG
GTATTGGCATTATCGCGAGTTCCTGAGCCGCAATCCTGAGCAGCAGATGTTAACCGATAAGATGGTGAATACGGTACGTC
GTGATCCTGTGCCATTAACGGTTAAACAGACTCGTCCCATCACTATTTCAGTGGTATTTCCTGGCCAACAGATTTCCGAT
TACTGGGTTCGCAACATCAAAGCATTTGAGCTGAGAATGCAAGAACTTGGTATTCAATATCAGCTTAATCAAGTATTTAC
CCGCCCTAATGTGGATGCGCGTGAATTGAGTTTATCGCTTATGGAGGCGATAAAAAGCAACTCTGATTACGTTATATTTA
CGCTAGATACCACTCGTCATCGCAAGTTTATCGAGCACGTTTTGCAGTCATCGAAAACCAAACTGATTTTGCAAAACATC
ACGACACCCATCAAAGCGTGGGATAAACGTCAACCCATGATGTATGTTGGCTTTGACCATGAACTGGGCACTTACCGTTT
ATTGGATTACTACCGCAGCCTTGAACCTATGGGCAGTGAGTACTCCGTTTTGTACTATTCAGAAGGTTATATCAGTGCAG
CGCGCGGTGATACGTTTATCCAGTCGATGGAAACTTTAGGCCGTTATCGCTTGGCGTCGTCTTACTACACCAAAGCGACA
GAGGCGAGTGGCTACGAAGCCACCCTCAATATTGTAAAAAATGACCCTAAAGTGAAGTTTATTTACGCCTGTTCAACGGA
TATCGCATTAGGCGCAATAAAGGCGCTGAAAGAGTTAAAACGCCAAGATATCATCATCAACGGATGGGGTGGTGGTTCAG
CGGAATTAAAAGCGATTGCGAAAGGCGATATGGCGGTGACCGTAATGCGTATGAACGATGATACTGGCGTTGCCATGGCT
GAAGCGGTGAAATGGGACTTAGAAGATAAGCCTGTTCCAACTGTCTATTCCGGCGATTTTGAAGTCGTAACGAAAGACGA
TAGCCCTGAACGCGTTAAGCGCTTAGAGAAATGGGCGTTTCGTTATTCAGATCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

68.219

100

0.682

Multiple sequence alignment