Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R1C93_RS16240 Genome accession   NZ_CP136754
Coordinates   2956959..2957582 (-) Length   207 a.a.
NCBI ID   WP_012132965.1    Uniprot ID   A8AIC0
Organism   Citrobacter koseri strain K820     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951959..2962582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1C93_RS16225 (R1C93_16225) helD 2952200..2954254 (-) 2055 WP_329600595.1 DNA helicase IV -
  R1C93_RS16230 (R1C93_16230) - 2954378..2954824 (+) 447 WP_012132963.1 YccF domain-containing protein -
  R1C93_RS16235 (R1C93_16235) yccS 2954843..2956990 (+) 2148 WP_024130467.1 YccS family putative transporter -
  R1C93_RS16240 (R1C93_16240) sxy/tfoX 2956959..2957582 (-) 624 WP_012132965.1 TfoX/Sxy family DNA transformation protein Regulator
  R1C93_RS16245 (R1C93_16245) sulA 2957799..2958308 (+) 510 WP_049008471.1 SOS-induced cell division inhibitor SulA -
  R1C93_RS16250 (R1C93_16250) ompA 2958664..2959710 (+) 1047 WP_047463714.1 porin OmpA -
  R1C93_RS16255 (R1C93_16255) matP 2959785..2960237 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  R1C93_RS16260 (R1C93_16260) - 2960423..2962183 (+) 1761 WP_329600596.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23953.68 Da        Isoelectric Point: 9.4100

>NTDB_id=892611 R1C93_RS16240 WP_012132965.1 2956959..2957582(-) (sxy/tfoX) [Citrobacter koseri strain K820]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIAGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=892611 R1C93_RS16240 WP_012132965.1 2956959..2957582(-) (sxy/tfoX) [Citrobacter koseri strain K820]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCACAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCAATCGCTGGCGTACATGAAGCGGCGCTCCCGGCGGTGCG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AIC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71