Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV11_RS15410 Genome accession   NZ_AP024895
Coordinates   3365618..3366625 (-) Length   335 a.a.
NCBI ID   WP_261893919.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3360618..3371625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS15385 rraA 3361247..3361774 (-) 528 WP_261893914.1 ribonuclease E activity regulator RraA -
  OCV11_RS15390 - 3361849..3362766 (-) 918 WP_261893915.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV11_RS15395 hslU 3362872..3364203 (-) 1332 WP_261893916.1 HslU--HslV peptidase ATPase subunit -
  OCV11_RS15400 hslV 3364245..3364811 (-) 567 WP_261893917.1 ATP-dependent protease subunit HslV -
  OCV11_RS15405 - 3364954..3365499 (-) 546 WP_261893918.1 SPOR domain-containing protein -
  OCV11_RS15410 cytR 3365618..3366625 (-) 1008 WP_261893919.1 DNA-binding transcriptional regulator CytR Regulator
  OCV11_RS15415 priA 3366936..3369140 (-) 2205 WP_261893920.1 primosomal protein N' -
  OCV11_RS15420 rpmE 3369446..3369664 (+) 219 WP_261893921.1 50S ribosomal protein L31 -
  OCV11_RS15425 - 3369941..3371218 (+) 1278 WP_261893922.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36792.35 Da        Isoelectric Point: 6.4960

>NTDB_id=89261 OCV11_RS15410 WP_261893919.1 3365618..3366625(-) (cytR) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAEISGPESAALCSFRHQGYQQALRRAGITMNPTYCVSGDFSFAAGAKLVKQLLALPEPPTA
IFCHNDTMAIGAIQQAKRLGLRVPQDLSVVGFDDIQFAEYSDPPLTTISQPRYEIGRQAMLMMLELLRGHDVQAGSRLLE
TKLVIRESAAPPRVR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=89261 OCV11_RS15410 WP_261893919.1 3365618..3366625(-) (cytR) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTCTCAACAGCGACGGTTTCCCGTGCTTTGATGAATCCAGAAAA
AGTCTCGTCTTCCACTCGTAAGCGTGTTGAGGATGCGGTTTTAGAAGCGGGCTATTCTCCCAACTCTTTAGCGAGAAATC
TGCGCCGTAATGAGTCTAAAACGATCGTTGCGATCGTTCCTGATATCTGTGACCCCTATTTTACAGAGATCATTCGCGGT
ATCGAAGATGCTGCGATGGAGCACGGTTACTTAGTGCTGTTAGGGGATAGCGGCCAGCAGAAAAAGCGGGAAAATTCATT
CGTCAATCTCGTCTTTACCAAGCAGGCAGACGGCATGTTGCTGTTGGGTACAGATCTCCCATTTGATGTGAGTAAGCCAG
AGCAGAAGAATCTACCACCTATGGTAATGGCGTGTGAGTTCGCACCTGAGCTTGAACTGCCAACGGTGCACATTGATAAC
TTGACCTCTGCCTTTGAAGCGGTGAATTATCTGACACAAATGGGGCACAAACGAGTGGCTGAAATTTCTGGTCCTGAAAG
TGCGGCATTGTGCTCTTTCCGTCATCAGGGGTATCAGCAGGCGCTGCGTCGTGCTGGGATCACCATGAATCCAACGTATT
GCGTATCTGGCGATTTCTCCTTTGCGGCAGGTGCTAAGTTAGTCAAACAGTTGTTGGCGTTACCTGAGCCACCAACCGCT
ATTTTCTGTCATAACGACACGATGGCGATTGGGGCAATTCAGCAAGCAAAACGTCTTGGCTTACGTGTACCACAAGATCT
TTCCGTGGTCGGCTTCGATGATATTCAGTTTGCTGAATATAGCGATCCACCATTGACGACTATCTCTCAGCCACGTTATG
AAATTGGCCGTCAGGCGATGCTAATGATGCTTGAGTTGCTTCGTGGGCACGATGTCCAAGCGGGTTCGCGTTTGCTAGAA
ACCAAGCTGGTCATTCGTGAGAGTGCCGCGCCACCTCGGGTACGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.675

99.104

0.928
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

99.403

0.887

Multiple sequence alignment