Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R0Q77_RS10040 Genome accession   NZ_CP136727
Coordinates   1661813..1662427 (+) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain F217     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656813..1667427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q77_RS10020 (R0Q77_10020) - 1657168..1658928 (-) 1761 WP_326979031.1 Lon protease family protein -
  R0Q77_RS10025 (R0Q77_10025) matP 1659114..1659566 (+) 453 WP_149381055.1 macrodomain Ter protein MatP -
  R0Q77_RS10030 (R0Q77_10030) ompA 1659665..1660729 (-) 1065 WP_326979032.1 porin OmpA -
  R0Q77_RS10035 (R0Q77_10035) sulA 1661087..1661596 (-) 510 WP_326979033.1 SOS-induced cell division inhibitor SulA -
  R0Q77_RS10040 (R0Q77_10040) sxy/tfoX 1661813..1662427 (+) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  R0Q77_RS10045 (R0Q77_10045) yccS 1662405..1664558 (-) 2154 WP_326979034.1 YccS family putative transporter -
  R0Q77_RS10050 (R0Q77_10050) - 1664577..1665023 (-) 447 WP_016152485.1 YccF domain-containing protein -
  R0Q77_RS10055 (R0Q77_10055) helD 1665149..1667203 (+) 2055 WP_326979035.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=892577 R0Q77_RS10040 WP_016152483.1 1661813..1662427(+) (sxy/tfoX) [Citrobacter braakii strain F217]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=892577 R0Q77_RS10040 WP_016152483.1 1661813..1662427(+) (sxy/tfoX) [Citrobacter braakii strain F217]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681