Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV11_RS02765 Genome accession   NZ_AP024895
Coordinates   582629..583147 (+) Length   172 a.a.
NCBI ID   WP_261894852.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 577629..588147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS02755 gshA 580430..581995 (+) 1566 WP_261894851.1 glutamate--cysteine ligase -
  OCV11_RS02760 - 581997..582602 (+) 606 WP_261896208.1 hypothetical protein -
  OCV11_RS02765 luxS 582629..583147 (+) 519 WP_261894852.1 S-ribosylhomocysteine lyase Regulator
  OCV11_RS02770 - 583257..584534 (-) 1278 WP_261894853.1 HlyC/CorC family transporter -
  OCV11_RS02775 - 584621..585415 (-) 795 WP_261894854.1 inner membrane protein YpjD -
  OCV11_RS02780 ffh 585642..587030 (+) 1389 WP_261894856.1 signal recognition particle protein -
  OCV11_RS02785 rpsP 587252..587500 (+) 249 WP_042480523.1 30S ribosomal protein S16 -
  OCV11_RS02790 rimM 587524..588078 (+) 555 WP_261894858.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19124.09 Da        Isoelectric Point: 6.3776

>NTDB_id=89247 OCV11_RS02765 WP_261894852.1 582629..583147(+) (luxS) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MPLLDSFTVDHTRMHAPAVRVAKNMTTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLFAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGAPDEQRVAKAWLAAMEDVLKVEDQNKIPELNKYQCGTAAMHSLEQAKQIAQNVISAGIQVNKNEDLA
LPEAMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89247 OCV11_RS02765 WP_261894852.1 582629..583147(+) (luxS) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGCCACTATTAGACAGTTTTACCGTCGATCATACACGTATGCATGCACCAGCAGTTCGTGTGGCAAAAAATATGACAAC
CCCTAAAGGCGATACAATCACTGTATTCGACCTGCGTTTTACTGTACCAAATAAAGACATTTTGTCTGAAAGAGGTATTC
ATACTCTAGAACATCTGTTTGCTGGCTTTATGCGTGCGCATTTAAACGGTTCTGATGTTGAAATCATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTTTACATGAGCCTTATTGGCGCTCCTGATGAACAGCGTGTAGCAAAAGCTTGGTTAGCTGC
GATGGAAGATGTTTTGAAAGTTGAAGATCAAAACAAGATTCCTGAATTGAACAAATACCAATGCGGTACTGCAGCTATGC
ACTCACTAGAACAAGCTAAGCAGATTGCACAAAATGTCATTTCTGCAGGTATTCAAGTGAATAAAAACGAAGATTTGGCA
TTGCCAGAAGCGATGTTGAAAGAACTTAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.465

100

0.855

Multiple sequence alignment