Detailed information NTG0892464

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RSQ48_RS13795
• Genome accession: NZ_CP136682
• Coordinates: 3035657..3036739 (-)
• Length: 360 a.a.
• NCBI ID: WP_415302358.1
• Uniprot ID: -
• Organism: Alcaligenes sp. SJTW-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3030657..3041739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RSQ48_RS13770 (RSQ48_13750)	nusB	3030760..3031275 (-)	516	WP_051010438.1	transcription antitermination factor NusB	-
RSQ48_RS13775 (RSQ48_13755)	ribH	3031229..3031747 (-)	519	WP_003802371.1	6,7-dimethyl-8-ribityllumazine synthase	-
RSQ48_RS13780 (RSQ48_13760)	ribBA	3031762..3032928 (-)	1167	WP_003802373.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
RSQ48_RS13785 (RSQ48_13765)	-	3033044..3033871 (+)	828	WP_003802374.1	IclR family transcriptional regulator	-
RSQ48_RS13790 (RSQ48_13770)	-	3033992..3035521 (+)	1530	WP_415301897.1	CHAD domain-containing protein	-
RSQ48_RS13795 (RSQ48_13775)	pilA	3035657..3036739 (-)	1083	WP_415302358.1	signal recognition particle-docking protein FtsY	Machinery gene
RSQ48_RS13800 (RSQ48_13780)	rsmD	3037155..3037784 (+)	630	WP_003802377.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RSQ48_RS13805 (RSQ48_13785)	coaD	3037805..3038311 (+)	507	WP_003802378.1	pantetheine-phosphate adenylyltransferase	-
RSQ48_RS13810 (RSQ48_13790)	-	3038397..3038654 (+)	258	WP_003802379.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RSQ48_RS13815 (RSQ48_13795)	-	3038724..3039122 (-)	399	WP_059318299.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 37839.53 Da
• Isoelectric Point: 5.0243

>NTDB_id=892464 RSQ48_RS13795 WP_415302358.1 3035657..3036739(-) (pilA) [Alcaligenes sp. SJTW-7]
MPEPDRTPEPEVQPIPEPEPKPEPEPEIAPVPAPAPAPQPEPAPTPEPEAAAPVVKTSWMSRLKQGLSRTGQSLSSLFVG
AKVDETLFEELEDALLMADAGVEATEKLITALRARVRKEKVSDAAQVKQILCDILTDHLKPLEKSFPLGSGKPLVVMIAG
VNGAGKTTSIGKLAHTFQEQGAKVLLAAGDTFRAAAREQLIEWGARNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMV
DTAGRLPTQLHLMEELKKIKRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVA
ACAQGVRPIPVYWIGVGEGMQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1083 bp

>NTDB_id=892464 RSQ48_RS13795 WP_415302358.1 3035657..3036739(-) (pilA) [Alcaligenes sp. SJTW-7]
GTGCCGGAGCCAGATCGGACTCCTGAGCCCGAGGTGCAACCGATCCCTGAACCGGAGCCAAAGCCAGAACCAGAGCCAGA
GATTGCTCCTGTTCCCGCACCGGCCCCCGCGCCACAGCCTGAACCAGCTCCGACCCCAGAACCAGAAGCCGCCGCCCCTG
TGGTGAAAACCTCCTGGATGTCCCGGTTGAAACAGGGCTTGTCGCGCACCGGTCAAAGTCTGAGCAGTCTGTTTGTCGGT
GCCAAGGTTGATGAAACCTTGTTTGAGGAGCTGGAAGATGCCTTATTGATGGCCGATGCCGGCGTGGAGGCAACGGAAAA
GCTGATTACCGCCTTGCGTGCGCGTGTACGCAAGGAAAAAGTCAGCGATGCAGCCCAGGTCAAGCAAATTCTGTGTGACA
TCCTGACCGATCATTTGAAGCCCTTGGAGAAGTCCTTTCCACTCGGTTCGGGCAAACCCCTGGTGGTCATGATTGCCGGT
GTTAACGGTGCGGGTAAAACCACGTCCATTGGCAAGCTGGCGCACACCTTTCAGGAGCAGGGCGCAAAAGTCCTGCTGGC
GGCGGGCGATACCTTTCGTGCGGCGGCGCGTGAGCAACTGATTGAATGGGGGGCGCGCAATAACGTCAGTGTGATTGCCC
AGGACGGGGGAGATCCCGCCGCCGTGGCGTTTGATGCGGTACACGCGGGCCGTGCCCGAGATATGGGGGTGGTCATGGTG
GATACCGCGGGCCGCTTGCCGACTCAACTGCACCTGATGGAAGAGCTCAAAAAGATCAAGCGCGTCATCGGCAAGGCGGA
CGGCCAGGCGCCACACGAAATACTCCTGGTTGTGGACGGCAATACCGGACAGAATGCGATCTCCCAGATTCGTGCCTTTG
ATGCCGCCTTGGGTCTGACGGGCCTGGTGGTCACCAAGCTGGACGGCACGGCCAAAGGCGGGACGCTGGCGGCGGTTGCC
GCCTGTGCTCAGGGCGTTCGACCCATTCCCGTGTACTGGATCGGGGTGGGCGAGGGTATGCAGGATCTGCAAGCGTTTGT
GGCGCGCGAGTTTGCTTCGGCCTTGCTGGGTATGAACGCCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-135)

• SRP54-type protein, GTPase domain (SRP54) (154-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.824	85	0.5