Detailed information NTG0892340

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: RVY84_RS25485
• Genome accession: NZ_CP136661
• Coordinates: 4870890..4872239 (-)
• Length: 449 a.a.
• NCBI ID: WP_088356563.1
• Uniprot ID: -
• Organism: Bacillus sp. 3P20
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4865890..4877239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RVY84_RS25465 (RVY84_25445)	secA	4866212..4868719 (-)	2508	WP_000579368.1	preprotein translocase subunit SecA	-
RVY84_RS25470 (RVY84_25450)	hpf	4868996..4869538 (-)	543	WP_000671190.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
RVY84_RS25475 (RVY84_25455)	cspC	4869862..4870059 (-)	198	WP_001990088.1	cold shock protein CspC	-
RVY84_RS25480 (RVY84_25460)	comFC	4870186..4870890 (-)	705	WP_011181921.1	comF operon protein ComFC	-
RVY84_RS25485 (RVY84_25465)	comFA	4870890..4872239 (-)	1350	WP_088356563.1	ATP-dependent helicase ComFA	Machinery gene
RVY84_RS25490 (RVY84_25470)	-	4872367..4873689 (-)	1323	WP_011181922.1	NlpC/P60 family protein	-
RVY84_RS25495 (RVY84_25475)	-	4873943..4874257 (-)	315	WP_000400857.1	winged helix-turn-helix transcriptional regulator	-
RVY84_RS25500 (RVY84_25480)	-	4874431..4875273 (-)	843	WP_000844766.1	DegV family protein	-
RVY84_RS25505 (RVY84_25485)	-	4875513..4876148 (+)	636	WP_000926685.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51175.86 Da
• Isoelectric Point: 9.7162

>NTDB_id=892340 RVY84_RS25485 WP_088356563.1 4870890..4872239(-) (comFA) [Bacillus sp. 3P20]
MVAGKQLLLEELSSDLRRELSDLKKKGEVICVQGVIKKVSKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRTGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEMSLLLKGLDNRIDGVHAEDPMRKEKVAAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=892340 RVY84_RS25485 WP_088356563.1 4870890..4872239(-) (comFA) [Bacillus sp. 3P20]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTCATATGTGTACAAGGCGTAATAAAGAAGGTTTCTAAATATATATGTCAGCGCTGCGGGAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGCTAGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAAAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAAGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCATTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAACGGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATAATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGCAGCGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

• Type III restriction enzyme, res subunit (ResIII) (108-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.153	93.096	0.486
comFA	Latilactobacillus sakei subsp. sakei 23K	40.75	89.087	0.363