Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RVY84_RS20920 | Genome accession | NZ_CP136661 |
| Coordinates | 4018783..4019826 (-) | Length | 347 a.a. |
| NCBI ID | WP_001013193.1 | Uniprot ID | - |
| Organism | Bacillus sp. 3P20 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4013783..4024826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RVY84_RS20875 (RVY84_20865) | - | 4014210..4014410 (-) | 201 | WP_000106081.1 | YqzE family protein | - |
| RVY84_RS20880 (RVY84_20870) | - | 4014449..4014946 (-) | 498 | WP_078437299.1 | shikimate kinase | - |
| RVY84_RS20885 (RVY84_20875) | - | 4015067..4015717 (-) | 651 | WP_139368380.1 | 2OG-Fe(II) oxygenase | - |
| RVY84_RS20890 (RVY84_20880) | comGG | 4015893..4016264 (-) | 372 | WP_001231191.1 | competence type IV pilus minor pilin ComGG | - |
| RVY84_RS20895 (RVY84_20885) | comGF | 4016261..4016731 (-) | 471 | WP_000923094.1 | competence type IV pilus minor pilin ComGF | - |
| RVY84_RS20900 (RVY84_20890) | comGE | 4016701..4017003 (-) | 303 | WP_202295033.1 | competence type IV pilus minor pilin ComGE | - |
| RVY84_RS20905 (RVY84_20895) | comGD | 4016996..4017451 (-) | 456 | WP_000810393.1 | comG operon protein ComGD | - |
| RVY84_RS20910 (RVY84_20900) | comGC | 4017448..4017747 (-) | 300 | WP_001178696.1 | comG operon protein ComGC | - |
| RVY84_RS20915 (RVY84_20905) | comGB | 4017759..4018790 (-) | 1032 | WP_070171620.1 | comG operon protein ComGB | - |
| RVY84_RS20920 (RVY84_20910) | comGA | 4018783..4019826 (-) | 1044 | WP_001013193.1 | competence protein ComGA | Machinery gene |
| RVY84_RS20925 (RVY84_20915) | - | 4020032..4020727 (+) | 696 | WP_000434132.1 | helix-turn-helix transcriptional regulator | - |
| RVY84_RS20930 (RVY84_20920) | - | 4020853..4021095 (+) | 243 | WP_000440720.1 | DUF2626 domain-containing protein | - |
| RVY84_RS20935 (RVY84_20925) | - | 4021203..4022597 (+) | 1395 | WP_413564570.1 | L-cystine transporter | - |
| RVY84_RS20940 (RVY84_20930) | - | 4022814..4023029 (-) | 216 | WP_001008320.1 | DUF3912 family protein | - |
| RVY84_RS20945 (RVY84_20935) | - | 4023282..4023593 (+) | 312 | WP_001093243.1 | hypothetical protein | - |
| RVY84_RS20950 (RVY84_20940) | - | 4023630..4024118 (-) | 489 | WP_000764247.1 | hypothetical protein | - |
| RVY84_RS20955 (RVY84_20945) | - | 4024198..4024572 (-) | 375 | WP_001012359.1 | nucleoside 2-deoxyribosyltransferase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 39377.92 Da Isoelectric Point: 9.2320
>NTDB_id=892329 RVY84_RS20920 WP_001013193.1 4018783..4019826(-) (comGA) [Bacillus sp. 3P20]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV
Nucleotide
Download Length: 1044 bp
>NTDB_id=892329 RVY84_RS20920 WP_001013193.1 4018783..4019826(-) (comGA) [Bacillus sp. 3P20]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAGGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGGTTACTCGTATTTACTGGACCGACTGGTTCAGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAGGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGGTTACTCGTATTTACTGGACCGACTGGTTCAGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
57.925 |
100 |
0.579 |
| pilB | Vibrio campbellii strain DS40M4 |
36.261 |
100 |
0.369 |