Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RVY84_RS20555 Genome accession   NZ_CP136661
Coordinates   3965039..3965833 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus sp. 3P20     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3960039..3970833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS20535 (RVY84_20525) - 3961853..3962086 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  RVY84_RS20540 (RVY84_20530) - 3962136..3962864 (-) 729 WP_000172591.1 glycerophosphodiester phosphodiesterase -
  RVY84_RS20545 (RVY84_20535) - 3962915..3963058 (+) 144 WP_001247675.1 YycC family protein -
  RVY84_RS20550 (RVY84_20540) - 3963227..3964753 (-) 1527 WP_070171719.1 glycosyltransferase family 39 protein -
  RVY84_RS20555 (RVY84_20545) spo0A 3965039..3965833 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  RVY84_RS20560 (RVY84_20550) spoIVB 3966121..3967419 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  RVY84_RS20565 (RVY84_20555) recN 3967538..3969277 (-) 1740 WP_070171720.1 DNA repair protein RecN Machinery gene
  RVY84_RS20570 (RVY84_20560) argR 3969545..3969994 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=892327 RVY84_RS20555 WP_003161566.1 3965039..3965833(-) (spo0A) [Bacillus sp. 3P20]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=892327 RVY84_RS20555 WP_003161566.1 3965039..3965833(-) (spo0A) [Bacillus sp. 3P20]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGACATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818