Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RVY84_RS19680 Genome accession   NZ_CP136661
Coordinates   3813775..3814209 (-) Length   144 a.a.
NCBI ID   WP_000811492.1    Uniprot ID   A0A0G8EA73
Organism   Bacillus sp. 3P20     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3808775..3819209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS19665 (RVY84_19655) - 3809849..3810406 (+) 558 WP_000062079.1 PadR family transcriptional regulator -
  RVY84_RS19670 (RVY84_19660) metE 3811024..3813312 (+) 2289 WP_078437786.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RVY84_RS19675 (RVY84_19665) comJ 3813349..3813738 (-) 390 WP_000424033.1 competence protein ComJ -
  RVY84_RS19680 (RVY84_19670) nucA/comI 3813775..3814209 (-) 435 WP_000811492.1 DNA-entry nuclease Machinery gene
  RVY84_RS19685 (RVY84_19675) - 3814446..3815195 (+) 750 WP_000388464.1 DUF3967 domain-containing protein -
  RVY84_RS19690 (RVY84_19680) kinB 3815250..3816524 (-) 1275 WP_000420390.1 sporulation sensor histidine kinase KinB -
  RVY84_RS19695 (RVY84_19685) - 3816835..3817035 (+) 201 WP_000929284.1 hypothetical protein -
  RVY84_RS19700 (RVY84_19690) - 3817158..3818321 (+) 1164 WP_000434592.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16012.35 Da        Isoelectric Point: 8.4331

>NTDB_id=892326 RVY84_RS19680 WP_000811492.1 3813775..3814209(-) (nucA/comI) [Bacillus sp. 3P20]
MKQLKGIIISIIAILSILVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=892326 RVY84_RS19680 WP_000811492.1 3813775..3814209(-) (nucA/comI) [Bacillus sp. 3P20]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTTTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACAAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGAGATATCCAGAAACAGGGA
AACATATTACGGATGCGATAAAGGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAG
TTATCGTTAGCTCCGTACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATCGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8EA73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.796

78.472

0.556