Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RVY84_RS09730 Genome accession   NZ_CP136661
Coordinates   1898336..1898623 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus sp. 3P20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893336..1903623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS09710 (RVY84_09700) - 1894511..1894708 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  RVY84_RS09715 (RVY84_09705) - 1894740..1895201 (+) 462 WP_000024996.1 NUDIX hydrolase -
  RVY84_RS09720 (RVY84_09710) nadE 1895249..1896067 (-) 819 WP_000174880.1 ammonia-dependent NAD(+) synthetase -
  RVY84_RS09725 (RVY84_09715) - 1896339..1898219 (+) 1881 WP_001026017.1 FtsX-like permease family protein -
  RVY84_RS09730 (RVY84_09720) abrB 1898336..1898623 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RVY84_RS09735 (RVY84_09725) - 1898898..1899848 (+) 951 WP_070172629.1 serine protease -
  RVY84_RS09740 (RVY84_09730) - 1899889..1900197 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  RVY84_RS09745 (RVY84_09735) - 1900305..1901240 (+) 936 WP_202295274.1 aldo/keto reductase -
  RVY84_RS09750 (RVY84_09740) - 1901289..1902464 (+) 1176 WP_078438368.1 MFS transporter -
  RVY84_RS09755 (RVY84_09745) - 1902653..1902877 (-) 225 WP_000162601.1 hypothetical protein -
  RVY84_RS09760 (RVY84_09750) - 1902962..1903309 (-) 348 WP_202295277.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=892319 RVY84_RS09730 WP_000648331.1 1898336..1898623(+) (abrB) [Bacillus sp. 3P20]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=892319 RVY84_RS09730 WP_000648331.1 1898336..1898623(+) (abrB) [Bacillus sp. 3P20]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516