Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RVY84_RS06430 Genome accession   NZ_CP136661
Coordinates   1252165..1252488 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus sp. 3P20     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247165..1257488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS06405 (RVY84_06395) - 1247514..1248800 (+) 1287 WP_000245999.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RVY84_RS06410 (RVY84_06400) sipW 1248994..1249563 (+) 570 WP_000767813.1 signal peptidase I SipW -
  RVY84_RS06415 (RVY84_06405) - 1249626..1250213 (+) 588 WP_000172838.1 CalY family protein -
  RVY84_RS06420 (RVY84_06410) - 1250377..1251222 (+) 846 WP_202295338.1 DUF4047 domain-containing protein -
  RVY84_RS06425 (RVY84_06415) calY 1251496..1252089 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  RVY84_RS06430 (RVY84_06420) sinR 1252165..1252488 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  RVY84_RS06435 (RVY84_06425) - 1252568..1252702 (-) 135 WP_202295341.1 DNA-binding anti-repressor SinI -
  RVY84_RS06440 (RVY84_06430) inhA1 1253046..1255433 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  RVY84_RS06445 (RVY84_06435) - 1255605..1256972 (+) 1368 WP_070171646.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=892316 RVY84_RS06430 WP_000578878.1 1252165..1252488(-) (sinR) [Bacillus sp. 3P20]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=892316 RVY84_RS06430 WP_000578878.1 1252165..1252488(-) (sinR) [Bacillus sp. 3P20]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692