Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV04_RS13725 Genome accession   NZ_AP024893
Coordinates   2962423..2963430 (-) Length   335 a.a.
NCBI ID   WP_042484975.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957423..2968430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS13700 rraA 2958017..2958544 (-) 528 WP_042484987.1 ribonuclease E activity regulator RraA -
  OCV04_RS13705 - 2958620..2959537 (-) 918 WP_102941280.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV04_RS13710 hslU 2959679..2961010 (-) 1332 WP_102941222.1 HslU--HslV peptidase ATPase subunit -
  OCV04_RS13715 hslV 2961042..2961596 (-) 555 WP_102941223.1 ATP-dependent protease subunit HslV -
  OCV04_RS13720 ftsN 2961765..2962310 (-) 546 WP_171138327.1 cell division protein FtsN -
  OCV04_RS13725 cytR 2962423..2963430 (-) 1008 WP_042484975.1 DNA-binding transcriptional regulator CytR Regulator
  OCV04_RS13730 priA 2963739..2965940 (-) 2202 WP_171138326.1 primosomal protein N' -
  OCV04_RS13735 rpmE 2966187..2966405 (+) 219 WP_102941226.1 50S ribosomal protein L31 -
  OCV04_RS13740 - 2966600..2967877 (+) 1278 WP_102941227.1 malic enzyme-like NAD(P)-binding protein -
  OCV04_RS13745 metJ 2967986..2968303 (-) 318 WP_042484962.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37069.50 Da        Isoelectric Point: 6.4969

>NTDB_id=89231 OCV04_RS13725 WP_042484975.1 2962423..2963430(-) (cytR) [Vibrio plantisponsor strain CECT 7581]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPESATLCQFRHQGYQQALRRAGITMNPTYTTYGDFTFESGVKAVRQLLSLPDAPTA
IFCHNDTMAIGAMQEAKRLGLRIPRDLSVVGFDDIQFSQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVQAGSRLLE
THLIVRESAAPPRSH

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=89231 OCV04_RS13725 WP_042484975.1 2962423..2963430(-) (cytR) [Vibrio plantisponsor strain CECT 7581]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGCGTATCGACCGCGACGGTGTCGCGAGCTCTGATGAATCCTGAGAA
AGTATCGTCTTCGACTCGCAAACGCGTAGAAGAAGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCAAGAAATC
TGCGTCGAAATGAGTCCAAAACGATTGTTGCGATTGTTCCGGATATTTGTGACCCTTATTTCACCGAAATCATTCGTGGT
ATTGAAGATGCGGCAATGGAGCATGGATATCTTGTTTTGCTGGGCGATAGTGGTCAGCAAAAGAAACGTGAAAGCTCATT
TGTTAACTTAGTCTTTACCAAGCAGGCCGACGGCATGTTGCTGTTAGGCACTGACTTACCATTTGATGTGAGCAAACCTG
AGCAGAAAAATCTTCCGCCAATGGTGATGGCTTGTGAATTCGCACCAGAGCTAGAACTACCGACAGTTCACATCGATAAC
CTAACTTCGGCATTTGAAGCTGTAAACTATCTGACTCAACTTGGGCATAAGCGCATCGCTCAAATCTCGGGTCCTGAAAG
TGCTACTCTTTGCCAATTCCGCCATCAAGGTTACCAGCAGGCATTGCGTAGAGCGGGCATCACTATGAATCCGACTTACA
CAACTTATGGTGATTTCACTTTTGAGTCGGGTGTGAAAGCTGTGCGTCAGTTGCTTTCGTTACCAGATGCGCCAACTGCT
ATCTTCTGTCACAACGACACTATGGCAATTGGTGCCATGCAGGAAGCTAAGCGCTTAGGTTTGCGTATTCCTCGTGACCT
TTCTGTGGTCGGATTCGATGACATTCAGTTCTCGCAATACTGCGATCCACCGTTGACAACGATTTCTCAGCCTCGCTATG
AGATTGGTCGTCAAGCTATGTTGATGATGTTGGAACTGTTGCGTGGGCATGACGTACAAGCGGGTTCTCGTTTATTAGAA
ACCCATTTGATTGTGCGTGAGAGTGCCGCTCCTCCTCGTTCCCACTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.976

99.104

0.931
  cytR Vibrio parahaemolyticus RIMD 2210633

88.889

99.403

0.884

Multiple sequence alignment