Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RVY84_RS00220 Genome accession   NZ_CP136661
Coordinates   40422..40706 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. 3P20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35422..45706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS00185 (RVY84_00185) tmk 35576..36202 (+) 627 WP_000677237.1 dTMP kinase -
  RVY84_RS00190 (RVY84_00190) holB 36238..37221 (+) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  RVY84_RS00195 (RVY84_00195) - 37227..38054 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  RVY84_RS00200 (RVY84_00200) yabA 38069..38419 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  RVY84_RS00205 (RVY84_00205) - 38540..39280 (+) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RVY84_RS00210 (RVY84_00210) - 39267..39557 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  RVY84_RS00215 (RVY84_00215) rsmI 39526..40401 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RVY84_RS00220 (RVY84_00220) abrB 40422..40706 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RVY84_RS00225 (RVY84_00225) metG 41197..43179 (+) 1983 WP_000134147.1 methionine--tRNA ligase -
  RVY84_RS00230 (RVY84_00230) - 43345..44112 (+) 768 WP_000895823.1 TatD family hydrolase -
  RVY84_RS00235 (RVY84_00235) rnmV 44327..44884 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=892302 RVY84_RS00220 WP_000843036.1 40422..40706(-) (abrB) [Bacillus sp. 3P20]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=892302 RVY84_RS00220 WP_000843036.1 40422..40706(-) (abrB) [Bacillus sp. 3P20]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851