Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R0Q59_RS01815 Genome accession   NZ_CP136658
Coordinates   366075..367454 (+) Length   459 a.a.
NCBI ID   WP_004895779.1    Uniprot ID   A0A921JNL9
Organism   Lactobacillus johnsonii strain GJ231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 361075..372454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q59_RS01780 (R0Q59_01780) - 361307..361399 (+) 93 WP_311317709.1 IS3 family transposase -
  R0Q59_RS01785 (R0Q59_01785) - 361562..362242 (-) 681 Protein_347 amino acid permease -
  R0Q59_RS01790 (R0Q59_01790) - 362416..362664 (-) 249 WP_004895788.1 low temperature requirement protein A -
  R0Q59_RS01795 (R0Q59_01795) pepC 362824..364173 (-) 1350 WP_004895787.1 aminopeptidase C -
  R0Q59_RS01800 (R0Q59_01800) - 364371..365060 (+) 690 WP_411163157.1 LCP family protein -
  R0Q59_RS01805 (R0Q59_01805) - 365244..365405 (+) 162 WP_234600860.1 hypothetical protein -
  R0Q59_RS01810 (R0Q59_01810) - 365524..366075 (+) 552 WP_004895781.1 dUTP diphosphatase -
  R0Q59_RS01815 (R0Q59_01815) radA 366075..367454 (+) 1380 WP_004895779.1 DNA repair protein RadA Machinery gene
  R0Q59_RS01820 (R0Q59_01820) gltX 367536..369035 (+) 1500 WP_094497122.1 glutamate--tRNA ligase -
  R0Q59_RS01825 (R0Q59_01825) cysS 369125..370537 (+) 1413 WP_004896726.1 cysteine--tRNA ligase -
  R0Q59_RS01830 (R0Q59_01830) - 370530..370973 (+) 444 WP_004895772.1 Mini-ribonuclease 3 -
  R0Q59_RS01835 (R0Q59_01835) rlmB 370960..371715 (+) 756 WP_004895769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50105.65 Da        Isoelectric Point: 7.2809

>NTDB_id=892286 R0Q59_RS01815 WP_004895779.1 366075..367454(+) (radA) [Lactobacillus johnsonii strain GJ231]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEIKKVSTKATASRLMTKIGNNDPVKLTEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSDSGILLYPETNMQNI
RDQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNEQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLAEVSNPSAIFLDERLPNSTGSSVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKNNLNQDLKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=892286 R0Q59_RS01815 WP_004895779.1 366075..367454(+) (radA) [Lactobacillus johnsonii strain GJ231]
ATGGCAAAAGTTAAAACTCGTTATAAGTGTCGTAATTGTGGATATATTTCTGCTTCCTATCTTGGGAGATGTCCCAATTG
TGGTGCTTGGAATCAATTTGAAGAAGAGACACAGGAAATTAAAAAAGTATCAACTAAGGCAACTGCAAGCCGGTTGATGA
CTAAAATTGGAAATAATGATCCAGTAAAGTTAACTGAAGTAAAAGCTGAGAAAGAAAAAAGAATTGTGACTCCTTTTGAA
GAATTAAATCGAGTTTTAGGAGGAGGGATTGTTCCAGGATCTTTAGTTTTAATTGGAGGAGATCCAGGAATTGGAAAATC
AACCTTAATGCTTCAAATTACTGGTGCTTTAGCTAAAGAACATAGCGTCTTATATGTTTCAGGAGAAGAGTCTGCGAGTC
AAATAAAGATGCGAGCAGATCGACTAGGAGTAAGCGATAGCGGAATTTTGCTTTATCCAGAAACAAATATGCAGAATATT
CGTGACCAGATTGATGAAATTAAGCCAGATTTTTTGGTAATTGACTCTATTCAAACAATGAACGAACCTTCACTTGATTC
AATGGTTGGATCTGCTTCTCAAGTACGTGAAGTAACAAGTGAATTAATGAAAATTGCTAAAAATGAACAAATAACTACTT
TTGTTATTGGGCATGTAACTAAAGAAGGAGCAATTGCTGGTCCCAAGATTATGGAACATATGGTTGATACCGTCCTTTAC
TTTGAAGGAGATGGGCACCACTCATATCGAATTTTAAGATCAGTCAAGAATCGTTTTGGCGCAGCTAATGAAATTGGAAT
GTTTGAGATGAAAAATGAAGGGTTAGCAGAAGTAAGTAATCCTTCAGCTATTTTCTTAGACGAACGCTTACCTAATTCGA
CTGGATCTTCAGTTGTCGTTTCACTTGAAGGAACGCGGCCGCTTCTTGCGGATATCCAAGCTTTAGTAACCCCAACAGCA
TTCGGATATGCAAAAAGAACAACTTCAGGATTAGATTTTAATCGAGTAGCACTTTTATTGGCAGTTTTAGAAAAAAGAGG
CAACTTAATGCTTCAAAATCAAGATGCTTTTCTAACTGCAACTGGTGGGATTAAATTAAATGAACCAGCAATTGATCTTG
CAATTTGTATGGCGGTTGCTTCAAGTTACAAAAATAAAGAAATTTCTTCGACTGATTGCTTTGTAGGTGAAGTTGGCTTA
ACTGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAGGCTGCAAAAGTAGGCTTTAAGAGGATTTTTAT
CCCTAAAAACAACTTAAACCAGGACCTTAAGAATAACTCTGAGATCGAAGTAATTGGAGTAGCAAGTTTACCACAAGCTT
TAAAACTTGTTTTTAACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

60.48

99.782

0.603
  radA Streptococcus pneumoniae Rx1

60.48

99.782

0.603
  radA Streptococcus pneumoniae D39

60.48

99.782

0.603
  radA Streptococcus pneumoniae R6

60.48

99.782

0.603
  radA Streptococcus pneumoniae TIGR4

60.48

99.782

0.603
  radA Streptococcus mitis SK321

60.48

99.782

0.603
  radA Bacillus subtilis subsp. subtilis str. 168

55.921

99.346

0.556