Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R0492_RS13850 Genome accession   NZ_CP136649
Coordinates   2656239..2656868 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain NXU98     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651239..2661868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS13825 rpsT 2651453..2651719 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  R0492_RS13830 holA 2651781..2652824 (-) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  R0492_RS13835 - 2653054..2653185 (+) 132 WP_003183686.1 YqzM family protein -
  R0492_RS13840 - 2653210..2655597 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  R0492_RS13845 - 2655601..2656170 (-) 570 WP_003183690.1 ComE operon protein 2 -
  R0492_RS13850 comEA 2656239..2656868 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  R0492_RS13855 comER 2656952..2657773 (+) 822 WP_003183696.1 late competence protein ComER -
  R0492_RS13860 - 2657843..2658598 (-) 756 WP_003183697.1 class I SAM-dependent methyltransferase -
  R0492_RS13865 rsfS 2658595..2658951 (-) 357 WP_003183699.1 ribosome silencing factor -
  R0492_RS13870 yqeK 2658965..2659528 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  R0492_RS13875 - 2659518..2660087 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  R0492_RS13880 yhbY 2660106..2660396 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  R0492_RS13885 aroE 2660390..2661226 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=892233 R0492_RS13850 WP_003183693.1 2656239..2656868(-) (comEA) [Bacillus licheniformis strain NXU98]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=892233 R0492_RS13850 WP_003183693.1 2656239..2656868(-) (comEA) [Bacillus licheniformis strain NXU98]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526