Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WN937_RS07485 Genome accession   NZ_CP152363
Coordinates   1621092..1622636 (-) Length   514 a.a.
NCBI ID   WP_069537034.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616092..1627636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS07465 (WN937_07465) - 1616106..1617536 (-) 1431 WP_269169486.1 lipopolysaccharide biosynthesis protein -
  WN937_RS07470 (WN937_07470) - 1617529..1618701 (-) 1173 WP_005483470.1 glycosyltransferase family 4 protein -
  WN937_RS07475 (WN937_07475) - 1618712..1619896 (-) 1185 WP_069537030.1 glycosyltransferase -
  WN937_RS07480 (WN937_07480) - 1620047..1621117 (-) 1071 WP_269169487.1 glycosyltransferase family 4 protein -
  WN937_RS07485 (WN937_07485) luxO 1621092..1622636 (-) 1545 WP_069537034.1 sigma-54 dependent transcriptional regulator Regulator
  WN937_RS07490 (WN937_07490) - 1622908..1623288 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  WN937_RS07495 (WN937_07495) - 1623301..1623987 (-) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  WN937_RS07500 (WN937_07500) - 1623987..1626053 (-) 2067 WP_049877691.1 SLBB domain-containing protein -
  WN937_RS07505 (WN937_07505) - 1626086..1626988 (-) 903 WP_069537036.1 OmpA family protein -
  WN937_RS07510 (WN937_07510) - 1627015..1627335 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57416.20 Da        Isoelectric Point: 5.8340

>NTDB_id=892232 WN937_RS07485 WP_069537034.1 1621092..1622636(-) (luxO) [Vibrio parahaemolyticus strain vp-HL-201910]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKQFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSSNLNGHNAPAMQTQPIEPVQPVQEAPAQHTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=892232 WN937_RS07485 WP_069537034.1 1621092..1622636(-) (luxO) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTTGGTGAAAGTGGCACGGGCAAAGAAGTGTGCGCCGAGGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGTTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAACAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGTAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAGCAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACACACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.299

97.082

0.479