Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R0492_RS13680 Genome accession   NZ_CP136649
Coordinates   2623654..2624424 (-) Length   256 a.a.
NCBI ID   WP_016885480.1    Uniprot ID   -
Organism   Bacillus licheniformis strain NXU98     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2618654..2629424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS13660 - 2618728..2619540 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  R0492_RS13665 - 2619566..2620204 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  R0492_RS13670 glyS 2620402..2622441 (-) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  R0492_RS13675 glyQ 2622434..2623321 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  R0492_RS13680 recO 2623654..2624424 (-) 771 WP_016885480.1 DNA repair protein RecO Machinery gene
  R0492_RS13685 - 2624462..2624605 (-) 144 WP_003183626.1 YqzL family protein -
  R0492_RS13690 era 2624767..2625672 (-) 906 WP_009327871.1 GTPase Era -
  R0492_RS13695 - 2625653..2626063 (-) 411 WP_003183631.1 cytidine deaminase -
  R0492_RS13700 - 2626195..2626575 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  R0492_RS13705 ybeY 2626553..2627029 (-) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  R0492_RS13710 - 2627026..2629080 (-) 2055 WP_237562993.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29531.16 Da        Isoelectric Point: 8.3083

>NTDB_id=892231 R0492_RS13680 WP_016885480.1 2623654..2624424(-) (recO) [Bacillus licheniformis strain NXU98]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLDDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=892231 R0492_RS13680 WP_016885480.1 2623654..2624424(-) (recO) [Bacillus licheniformis strain NXU98]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGACGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.734

100

0.777