Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R0492_RS08430 Genome accession   NZ_CP136649
Coordinates   1630978..1631265 (+) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain NXU98     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625978..1636265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS08410 - 1627624..1627998 (+) 375 WP_003181373.1 DUF4440 domain-containing protein -
  R0492_RS08415 - 1628136..1629368 (-) 1233 WP_011197946.1 aminopeptidase -
  R0492_RS08420 - 1629459..1629590 (-) 132 WP_003181378.1 protein YkpC -
  R0492_RS08425 mreBH 1629664..1630671 (-) 1008 WP_161658289.1 rod-share determining protein MreBH -
  R0492_RS08430 abrB 1630978..1631265 (+) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  R0492_RS08435 - 1631433..1632770 (+) 1338 WP_408581362.1 ATP-binding protein -
  R0492_RS08440 - 1632835..1633497 (+) 663 WP_003181388.1 TrkA family potassium uptake protein -
  R0492_RS08445 ade 1633625..1635346 (+) 1722 WP_011197948.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=892216 R0492_RS08430 WP_003181383.1 1630978..1631265(+) (abrB) [Bacillus licheniformis strain NXU98]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=892216 R0492_RS08430 WP_003181383.1 1630978..1631265(+) (abrB) [Bacillus licheniformis strain NXU98]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537