Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   R0492_RS06215 Genome accession   NZ_CP136649
Coordinates   1208282..1208860 (+) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   A0A1Y0YMJ8
Organism   Bacillus licheniformis strain NXU98     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203282..1213860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS06190 - 1203784..1204290 (-) 507 WP_370539003.1 methyl-accepting chemotaxis protein -
  R0492_RS06195 - 1204543..1205076 (-) 534 Protein_1165 protoglobin family protein -
  R0492_RS06200 - 1205183..1206733 (-) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  R0492_RS06205 - 1206853..1207710 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  R0492_RS06210 - 1207776..1208009 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  R0492_RS06215 comK 1208282..1208860 (+) 579 WP_003180354.1 competence protein ComK Regulator
  R0492_RS06220 - 1208854..1209219 (-) 366 WP_003180357.1 hypothetical protein -
  R0492_RS06225 - 1209428..1210039 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  R0492_RS06230 lepB 1210052..1210570 (+) 519 WP_003180360.1 signal peptidase I -
  R0492_RS06235 - 1210725..1212500 (-) 1776 WP_085059318.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=892202 R0492_RS06215 WP_003180354.1 1208282..1208860(+) (comK) [Bacillus licheniformis strain NXU98]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=892202 R0492_RS06215 WP_003180354.1 1208282..1208860(+) (comK) [Bacillus licheniformis strain NXU98]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YMJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672