Detailed information NTG0089220

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV04_RS12260
• Genome accession: NZ_AP024893
• Coordinates: 2651771..2655157 (+)
• Length: 1128 a.a.
• NCBI ID: WP_206361900.1
• Uniprot ID: -
• Organism: Vibrio plantisponsor strain CECT 7581
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2646771..2660157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV04_RS12235	erpA	2647240..2647581 (-)	342	WP_042484430.1	iron-sulfur cluster insertion protein ErpA	-
OCV04_RS12240	hemL	2647874..2649169 (+)	1296	WP_102963241.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV04_RS12245	-	2649214..2649372 (-)	159	WP_171138183.1	hypothetical protein	-
OCV04_RS12250	-	2649410..2650495 (+)	1086	WP_102941008.1	AI-2E family transporter	-
OCV04_RS12255	rsmC	2650583..2651608 (+)	1026	WP_102941007.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV04_RS12260	chiS	2651771..2655157 (+)	3387	WP_206361900.1	ATP-binding protein	Regulator
OCV04_RS12265	-	2655956..2657626 (+)	1671	WP_171138231.1	ABC transporter substrate-binding protein	-
OCV04_RS12270	-	2657771..2658757 (+)	987	WP_102941005.1	ABC transporter permease	-
OCV04_RS12275	-	2658760..2659785 (+)	1026	WP_102941004.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127789.27 Da
• Isoelectric Point: 6.1311

>NTDB_id=89220 OCV04_RS12260 WP_206361900.1 2651771..2655157(+) (chiS) [Vibrio plantisponsor strain CECT 7581]
MFRFYRRQKFKRLQNTLMLAFLVLSITPLTVTAIFFLKSHIDDLQEQSTSHLLSVRDTKQQQVIDYLNAKESEVMGFVRS
ELAYASGGRFYGLVNAFTRLGENIEQARENAQQRYILGSGDQVKTSVLPQSSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDLHGNVTYSINKNEEFGTNLFSGKFKDSNLGQTFQRLEQSVSEHRKTNEDFTPVIQSDFIEENGPQYAWFGAPI
IQQGYLHSYAMFRLPNKGITKLIADSSNSPMRTLLVGQDHRSRTLSYLQDDIDKSREVISLALSGKQDVGTYTDAVGEKN
IAAYAPINLNSTHWAIVVELPEKEAFARVNQLEKLFIFAMLTAIVLVVIASHMLSNFITSPLLRLTWAAERASAGDLDES
MINTDRKDEIGRLAVSFERMQRSIREKIQLIKSQNSELEKNIQIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGANGPITSDHKYQLDIIATSGQRLARLVDNLLDYHKMRYGDLDIQCDAVDLSSSTRLVLELSNHLLGKKPIRII
NQISDNQFWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISASQIDDQVRVQVVDTGQGIPAEQLEHIFEPLIQGTVETNR
YRQGSGLGLSISRQLIELMNGTLYVSSQPLVGTTFSFTLPIASAEDIERARLTEQPHYQVLEVGEVELPDTSNLPENSDG
PLLLVADDEPVNLRILDSFLHLEGYRVRTVADGNEVLRAVENEKPELLLLDIMMPGMSGYQVCEKLREKYSLTDLPIIML
TALNQTEDRLRGFAAGANDYLSKPFNKKELAARIHAHMAASQAEQRRLENLELQNELKQRNVVEADLLETQERLLEQLES
APEAIVCLKENNKVLFANQAASRLFKRTQEQLKRSSAEELFSHKHLNISQQHYCGEVDIFVGDSRLHLPADILKLPKGSG
MQAIYILNVGGAQSAQRIQNLETAVDALSSYAFSGDKERLQQLKELGGEFTRIADKAEGDNQSKQELMRAVLVDAMTSAL
NYWEKAPGQTKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHHNEPGSERIHLEALRNK
LQKLIAAM

Nucleotide

• Length: 3387 bp

>NTDB_id=89220 OCV04_RS12260 WP_206361900.1 2651771..2655157(+) (chiS) [Vibrio plantisponsor strain CECT 7581]
ATGTTCAGGTTTTATCGCAGGCAAAAGTTTAAACGCTTACAAAACACCTTGATGCTGGCCTTTCTGGTTCTCAGCATTAC
TCCACTGACTGTAACAGCTATTTTCTTCTTGAAGTCTCATATTGACGATCTTCAAGAACAAAGTACCTCTCACCTTCTGT
CTGTTCGAGATACTAAACAACAGCAAGTTATCGACTACCTCAACGCCAAAGAGTCTGAGGTGATGGGTTTTGTCCGCTCA
GAGCTTGCTTACGCCAGTGGCGGACGATTTTATGGCCTCGTCAACGCTTTTACACGTTTGGGCGAAAACATTGAACAAGC
CAGAGAGAACGCTCAACAGCGCTATATACTAGGTTCCGGAGATCAGGTTAAAACGTCGGTGTTACCGCAATCCAGTAGCT
ATGTCGGCAGTGAGCGCTACCGCCTTTTGCATAAACGCTATCACTGGGCATACATGGAGTTACTCAAACGCTCTGATTTC
GATGATATTTTATTGGTCGACTTGCACGGTAATGTCACTTACTCCATCAATAAAAATGAAGAGTTCGGTACCAACCTGTT
TAGCGGAAAATTCAAAGACTCAAACTTAGGCCAAACCTTTCAGCGCTTGGAACAGTCCGTTTCCGAGCACAGAAAAACCA
ACGAGGATTTTACCCCAGTTATTCAGTCCGATTTTATTGAAGAAAACGGACCACAATACGCTTGGTTTGGCGCACCGATT
ATCCAGCAAGGTTATCTGCATAGCTACGCGATGTTCCGCTTGCCAAACAAGGGAATCACCAAACTCATAGCTGATAGCAG
CAACTCACCAATGCGGACACTTCTTGTTGGTCAGGATCACCGCTCGCGGACACTTTCTTACCTACAAGATGACATCGATA
AAAGCCGTGAAGTCATTAGCTTAGCCTTATCTGGTAAGCAAGATGTAGGCACTTACACCGACGCCGTTGGTGAAAAGAAC
ATCGCGGCTTATGCTCCGATCAACCTAAACAGCACACATTGGGCTATTGTCGTAGAACTGCCCGAAAAAGAGGCTTTTGC
GCGAGTAAACCAGTTAGAAAAACTGTTCATTTTTGCCATGCTTACCGCCATCGTGCTAGTGGTTATCGCGTCACACATGC
TTTCAAACTTCATTACTTCACCACTGTTAAGGCTAACCTGGGCAGCTGAACGTGCATCGGCTGGCGATCTCGATGAAAGT
ATGATTAATACCGATCGTAAAGATGAAATTGGTCGTCTTGCGGTAAGCTTTGAACGTATGCAGCGTTCCATTAGAGAAAA
AATCCAACTCATCAAATCACAAAACAGTGAGTTGGAGAAAAATATCCAAATCATTCGTAAACAAAACGATGAACTGCAAC
TAGCGAACAAGCTCAAAGATGAGTTTCTAGCCACAACCTCTCACGAGCTGAGAACCCCTCTGCACGGCATGATTGGTATA
GCAGAAGCCTTAATCTCTGGCGCAAACGGCCCTATTACCTCTGATCACAAATATCAGTTGGATATCATTGCCACCAGTGG
GCAACGCCTTGCTCGGCTGGTCGATAACTTACTCGACTACCATAAAATGCGTTATGGAGACTTGGATATTCAGTGTGATG
CGGTTGATCTGTCCAGCTCAACACGTTTGGTGCTAGAACTCTCTAACCACCTGTTGGGTAAGAAGCCGATCCGAATCATC
AATCAAATTTCCGACAATCAGTTCTGGGTTTCCGCCGATCCGCAGCGTTTAGAGCAAGTGCTGTATAACCTGATTGGTAA
CGCGATCAAATATACGTCGGAAGGTAAGATTGTTATCTCTGCTTCTCAAATTGATGATCAGGTTCGCGTCCAAGTTGTCG
ATACCGGTCAAGGCATTCCCGCCGAGCAGTTGGAACATATCTTTGAACCGCTCATCCAAGGAACCGTCGAAACTAACCGC
TATCGCCAAGGTTCAGGTTTAGGCTTATCGATTAGCCGACAACTGATTGAACTGATGAACGGCACTCTTTATGTCAGCAG
CCAACCGCTGGTTGGCACAACATTCAGCTTCACGTTGCCTATTGCTTCAGCAGAAGATATTGAGCGAGCGAGACTGACTG
AACAGCCTCACTACCAAGTACTTGAAGTTGGAGAGGTTGAGCTGCCCGATACCAGCAATTTGCCGGAGAACAGTGACGGA
CCTTTACTGCTGGTTGCCGATGACGAACCTGTAAACCTGCGAATTCTGGACAGCTTCTTACACTTAGAAGGCTACCGCGT
ACGCACCGTTGCTGATGGTAACGAAGTGCTCAGGGCCGTTGAGAACGAAAAGCCAGAACTACTGCTGCTCGATATTATGA
TGCCGGGCATGAGCGGTTACCAAGTGTGCGAAAAGCTGAGAGAAAAATACAGCCTCACCGATTTGCCTATCATCATGCTT
ACTGCTCTGAATCAAACAGAAGATCGCTTGAGAGGCTTTGCCGCTGGCGCGAATGACTATCTGTCAAAACCGTTCAATAA
AAAAGAATTAGCAGCTAGGATTCATGCTCATATGGCTGCAAGTCAGGCAGAACAAAGACGACTAGAAAATCTTGAGTTAC
AAAACGAACTCAAACAAAGAAATGTCGTCGAAGCCGATTTGCTCGAAACACAAGAACGTTTGCTGGAACAGTTAGAATCA
GCACCGGAAGCTATTGTATGCCTCAAAGAAAACAACAAGGTTCTGTTCGCAAACCAAGCGGCATCTAGGCTGTTTAAGCG
CACACAAGAGCAGCTGAAACGCTCTAGTGCTGAAGAGCTTTTTTCCCATAAGCATCTCAACATTAGCCAGCAACACTATT
GTGGCGAAGTCGATATTTTTGTCGGAGATTCACGCCTTCATTTACCTGCCGATATTCTAAAGCTTCCTAAAGGCTCTGGA
ATGCAGGCTATATACATTTTAAATGTTGGAGGGGCTCAGAGCGCACAAAGAATACAAAACCTCGAAACAGCGGTTGATGC
TCTATCGAGTTATGCGTTTAGTGGCGATAAAGAAAGACTGCAGCAACTTAAAGAGCTGGGCGGAGAGTTCACCAGAATTG
CAGATAAAGCAGAAGGCGATAATCAATCCAAGCAAGAGCTTATGCGCGCTGTGCTTGTCGATGCGATGACAAGCGCCCTC
AACTACTGGGAGAAAGCTCCCGGCCAAACCAAGTTCACTTTTGCAGAACAAAGCGGACTGTGGCGTGTTTACTTGGACAG
AAGTACATTACAAACACGTACACTCGACAAGTATCTGCGCATCGAAACGCTTCCGAAAACCCCACGCTGGCGTACCGTAC
TAAACTCGCTCGATTACATCCTTGAGCATCACAATGAGCCGGGGTCAGAACGTATTCACCTTGAAGCCCTGCGTAACAAG
TTGCAGAAACTTATCGCAGCTATGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-834)

• PAS fold (PAS) (874-925)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• HAMP domain (HAMP) (374-426)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	78.812	100	0.788