Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAC934_RS18870 Genome accession   NZ_CP152362
Coordinates   3662181..3663314 (-) Length   377 a.a.
NCBI ID   WP_327842587.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3657181..3668314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS18830 (AAC934_18830) ywnA 3657328..3657729 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  AAC934_RS18835 (AAC934_18835) ureC 3657864..3659573 (-) 1710 WP_003243090.1 urease subunit alpha -
  AAC934_RS18840 (AAC934_18840) ureB 3659570..3659944 (-) 375 WP_015251023.1 urease subunit beta -
  AAC934_RS18845 (AAC934_18845) ureA 3659941..3660258 (-) 318 WP_003227724.1 urease subunit gamma -
  AAC934_RS18850 (AAC934_18850) - 3660439..3660603 (-) 165 WP_015649919.1 hypothetical protein -
  AAC934_RS18855 (AAC934_18855) - 3660905..3661073 (-) 169 Protein_3665 urea ABC transporter substrate-binding protein -
  AAC934_RS18860 (AAC934_18860) csbD 3661285..3661473 (-) 189 WP_003227718.1 stress response protein CsbD -
  AAC934_RS18865 (AAC934_18865) - 3661546..3662025 (-) 480 WP_003244390.1 hypothetical protein -
  AAC934_RS18870 (AAC934_18870) rapC 3662181..3663314 (-) 1134 WP_327842587.1 response regulator aspartate phosphatase RapB Regulator
  AAC934_RS18875 (AAC934_18875) moaA 3663506..3664531 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  AAC934_RS18880 (AAC934_18880) fdhD 3664547..3665335 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AAC934_RS18885 (AAC934_18885) - 3665582..3665743 (-) 162 WP_003227706.1 hypothetical protein -
  AAC934_RS18890 (AAC934_18890) ywmD 3665838..3666512 (-) 675 WP_003243553.1 VWA domain-containing protein -
  AAC934_RS18895 (AAC934_18895) - 3666565..3666705 (-) 141 WP_014478246.1 hypothetical protein -
  AAC934_RS18900 (AAC934_18900) ywmC 3666836..3667519 (-) 684 WP_014478248.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45071.27 Da        Isoelectric Point: 4.7975

>NTDB_id=892180 AAC934_RS18870 WP_327842587.1 3662181..3663314(-) (rapC) [Bacillus subtilis strain LP]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDCQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=892180 AAC934_RS18870 WP_327842587.1 3662181..3663314(-) (rapC) [Bacillus subtilis strain LP]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATTGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424