Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV04_RS10485 Genome accession   NZ_AP024893
Coordinates   2254467..2255867 (-) Length   466 a.a.
NCBI ID   WP_102940163.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2249467..2260867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS10450 moaE 2249969..2250424 (-) 456 WP_171138430.1 molybdopterin synthase catalytic subunit MoaE -
  OCV04_RS10455 moaD 2250426..2250671 (-) 246 WP_102953795.1 molybdopterin synthase sulfur carrier subunit -
  OCV04_RS10460 moaC 2250668..2251147 (-) 480 WP_102962741.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV04_RS10465 moaB 2251160..2251666 (-) 507 WP_042486196.1 molybdenum cofactor biosynthesis protein B -
  OCV04_RS10470 moaA 2251744..2252733 (-) 990 WP_171138429.1 GTP 3',8-cyclase MoaA -
  OCV04_RS10475 yvcK 2253121..2254011 (+) 891 WP_102940304.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCV04_RS10480 luxU 2254111..2254464 (-) 354 WP_206361921.1 quorum-sensing phosphorelay protein LuxU -
  OCV04_RS10485 luxO 2254467..2255867 (-) 1401 WP_102940163.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV04_RS10490 uvrB 2256138..2258168 (-) 2031 WP_171138428.1 excinuclease ABC subunit UvrB -
  OCV04_RS10500 fbpC 2258967..2260022 (-) 1056 WP_102940165.1 ferric ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52067.65 Da        Isoelectric Point: 5.5633

>NTDB_id=89218 OCV04_RS10485 WP_102940163.1 2254467..2255867(-) (luxO) [Vibrio plantisponsor strain CECT 7581]
MQHNYTPQKAKYLLMVEDTVSVAALYRSYLTPLEIDINIVGTGREAIESIAAREPDLILLDLRLPDMTGMDVLHAVKQKS
PEVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDADGLNNQNYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAADRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RSDDVIEIAYSLLGYMSKEEGKGFVRLSPEVVERFKRYEWPGNVRQLQNVLRNVVVLNEGKEITQDMLPPPLNLPQERVE
SVDMPMSGPITVHEIFPLWMTEKQAIEKAIEACDGNIPKAAGYLDVSPSTLYRKLQTWNEKEKESR

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=89218 OCV04_RS10485 WP_102940163.1 2254467..2255867(-) (luxO) [Vibrio plantisponsor strain CECT 7581]
ATGCAACATAATTACACACCACAAAAAGCAAAATACTTATTGATGGTGGAAGACACGGTGTCCGTGGCGGCATTGTATCG
TTCTTATCTAACTCCACTTGAAATAGATATCAACATAGTAGGGACGGGGCGCGAAGCAATAGAAAGCATCGCCGCACGCG
AACCTGATTTAATTCTTCTCGACCTTCGATTACCAGATATGACTGGGATGGACGTTTTGCATGCCGTAAAACAGAAATCA
CCTGAAGTTCCCGTTATTTTCATGACCGCGCATGGTTCGATTGATACAGCGGTTGAAGCAATGCGCCACGGGGCTCAGGA
CTTTTTGATCAAACCTTGTGAAGCGGATCGACTGCGTGTCACCGTGAACAACGCTATCCGCAAAGCCAGTAAGCTAAAAA
ATGATGCTGATGGTCTTAATAATCAAAATTATCAGGGCTTTATCGGAAGTAGTCAGACGATGCAGGCGGTTTATCGCACC
ATAGACTCGGCCGCGACCAGTAAAGCGAGCATTTTTATAACCGGAGAAAGTGGTACCGGTAAAGAAGTGTGTGCAGAGGC
GATTCATGCGGCAAGTAAACGCGGTGATAAACCGTTTATCGCTATTAACTGTGCTGCGATTCCTAAAGATTTGATTGAAA
GTGAGTTGTTTGGTCACGTGAAAGGTGCCTTTACAGGTGCCGCGGCTGACCGACAAGGCGCAGCTGAATTAGCAGATGGA
GGCACACTGTTTCTCGATGAGTTGTGCGAGATGGATCTAGAATTGCAAACAAAACTGCTTCGCTTTATTCAGACGGGCAC
ATTTCAAAAAGTCGGCTCTTCTAAGATGAAAAGCGTGGATGTACGATTCGTTTGTGCAACCAACCGAGATCCATGGAAAG
AAGTGCAGGAAGGGCGTTTTAGGGAAGACTTATATTACCGCCTCTATGTTATCCCATTGCATCTGCCGCCTTTGCGTGAA
CGAAGTGATGACGTCATCGAAATCGCTTATTCGCTGTTGGGTTATATGTCTAAAGAAGAAGGCAAAGGTTTTGTTCGTTT
GTCTCCTGAAGTGGTAGAGCGCTTTAAACGCTACGAGTGGCCGGGTAACGTTCGTCAGTTACAGAATGTATTGCGTAATG
TAGTGGTTCTTAATGAGGGTAAAGAGATCACTCAAGATATGTTGCCTCCACCGTTGAACTTACCTCAGGAACGTGTTGAA
TCCGTTGACATGCCGATGAGCGGTCCTATTACCGTGCATGAAATCTTTCCTCTTTGGATGACGGAAAAACAGGCGATCGA
AAAAGCGATAGAAGCTTGTGATGGCAACATTCCAAAAGCGGCGGGCTATTTGGATGTCAGCCCTTCAACGCTCTATAGAA
AACTACAAACGTGGAATGAGAAAGAGAAGGAAAGTCGATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.616

96.137

0.852

Multiple sequence alignment