Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AAC934_RS15305 Genome accession   NZ_CP152362
Coordinates   2963447..2964157 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958447..2969157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS15285 (AAC934_15285) cysK 2958498..2959433 (+) 936 WP_003229237.1 cysteine synthase A -
  AAC934_RS15290 (AAC934_15290) pepV 2959467..2960858 (-) 1392 WP_021480325.1 dipeptidase PepV -
  AAC934_RS15295 (AAC934_15295) pbuO 2960955..2962253 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  AAC934_RS15300 (AAC934_15300) ythQ 2962293..2963450 (-) 1158 WP_342623362.1 ABC transporter permease -
  AAC934_RS15305 (AAC934_15305) pptA 2963447..2964157 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  AAC934_RS15310 (AAC934_15310) ytzE 2964447..2964668 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  AAC934_RS15315 (AAC934_15315) rsuA 2964790..2965509 (-) 720 WP_029318266.1 pseudouridine synthase -
  AAC934_RS15320 (AAC934_15320) murJ 2965578..2967212 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  AAC934_RS15325 (AAC934_15325) ytfP 2967415..2968677 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=892161 AAC934_RS15305 WP_015714539.1 2963447..2964157(-) (pptA) [Bacillus subtilis strain LP]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=892161 AAC934_RS15305 WP_015714539.1 2963447..2964157(-) (pptA) [Bacillus subtilis strain LP]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432