Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RZ534_RS11965 Genome accession   NZ_CP136643
Coordinates   2320592..2321362 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2315592..2326362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS11945 (RZ534_11945) - 2315685..2316506 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  RZ534_RS11950 (RZ534_11950) - 2316532..2317170 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  RZ534_RS11955 (RZ534_11955) glyS 2317337..2319382 (-) 2046 WP_317327631.1 glycine--tRNA ligase subunit beta -
  RZ534_RS11960 (RZ534_11960) glyQ 2319375..2320262 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  RZ534_RS11965 (RZ534_11965) recO 2320592..2321362 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  RZ534_RS11970 (RZ534_11970) - 2321398..2321541 (-) 144 WP_008342408.1 YqzL family protein -
  RZ534_RS11975 (RZ534_11975) era 2321689..2322594 (-) 906 WP_007501305.1 GTPase Era -
  RZ534_RS11980 (RZ534_11980) - 2322587..2322985 (-) 399 WP_008342410.1 cytidine deaminase -
  RZ534_RS11985 (RZ534_11985) - 2323098..2323484 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  RZ534_RS11990 (RZ534_11990) ybeY 2323462..2323941 (-) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  RZ534_RS11995 (RZ534_11995) - 2323942..2326056 (-) 2115 WP_370529233.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=892142 RZ534_RS11965 WP_007501304.1 2320592..2321362(-) (recO) [Bacillus altitudinis strain RS1]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=892142 RZ534_RS11965 WP_007501304.1 2320592..2321362(-) (recO) [Bacillus altitudinis strain RS1]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACGGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758