Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RZ534_RS11690 Genome accession   NZ_CP136643
Coordinates   2270528..2271598 (-) Length   356 a.a.
NCBI ID   WP_317327614.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265528..2276598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS11640 (RZ534_11640) sipW 2265624..2266196 (-) 573 WP_041091749.1 signal peptidase I SipW -
  RZ534_RS11645 (RZ534_11645) tapA 2266246..2266773 (-) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  RZ534_RS11650 (RZ534_11650) - 2267026..2267352 (+) 327 WP_083561443.1 DUF3889 domain-containing protein -
  RZ534_RS11655 (RZ534_11655) - 2267386..2267580 (-) 195 WP_034319624.1 YqzE family protein -
  RZ534_RS11660 (RZ534_11660) - 2267641..2268024 (-) 384 WP_317327607.1 competence type IV pilus minor pilin ComGG -
  RZ534_RS11665 (RZ534_11665) comGF 2268021..2268518 (-) 498 WP_317327609.1 competence type IV pilus minor pilin ComGF -
  RZ534_RS11670 (RZ534_11670) comGE 2268460..2268774 (-) 315 WP_317327610.1 competence type IV pilus minor pilin ComGE -
  RZ534_RS11675 (RZ534_11675) comGD 2268758..2269204 (-) 447 WP_116307138.1 competence type IV pilus minor pilin ComGD -
  RZ534_RS11680 (RZ534_11680) comGC 2269197..2269490 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  RZ534_RS11685 (RZ534_11685) comGB 2269507..2270547 (-) 1041 WP_317327613.1 competence type IV pilus assembly protein ComGB -
  RZ534_RS11690 (RZ534_11690) comGA 2270528..2271598 (-) 1071 WP_317327614.1 competence type IV pilus ATPase ComGA Machinery gene
  RZ534_RS11695 (RZ534_11695) - 2272064..2272936 (-) 873 WP_035390819.1 STAS domain-containing protein -
  RZ534_RS11705 (RZ534_11705) - 2273162..2273542 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  RZ534_RS11710 (RZ534_11710) - 2273755..2273997 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  RZ534_RS11715 (RZ534_11715) - 2274046..2274684 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  RZ534_RS11720 (RZ534_11720) - 2274845..2275018 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  RZ534_RS11725 (RZ534_11725) - 2275043..2275357 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40251.59 Da        Isoelectric Point: 9.0418

>NTDB_id=892141 RZ534_RS11690 WP_317327614.1 2270528..2271598(-) (comGA) [Bacillus altitudinis strain RS1]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQKIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLESGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=892141 RZ534_RS11690 WP_317327614.1 2270528..2271598(-) (comGA) [Bacillus altitudinis strain RS1]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAGGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGAAGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCGACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATCTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643