Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RZ534_RS07295 Genome accession   NZ_CP136643
Coordinates   1419749..1420027 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain RS1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414749..1425027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS07270 (RZ534_07270) - 1414842..1415117 (-) 276 WP_008345136.1 hypothetical protein -
  RZ534_RS07275 (RZ534_07275) - 1415262..1416881 (+) 1620 WP_007498620.1 ABC-F family ATP-binding cassette domain-containing protein -
  RZ534_RS07280 (RZ534_07280) - 1416922..1418154 (-) 1233 WP_317329098.1 aminopeptidase -
  RZ534_RS07285 (RZ534_07285) - 1418259..1418390 (-) 132 WP_003210922.1 protein YkpC -
  RZ534_RS07290 (RZ534_07290) mreBH 1418465..1419472 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  RZ534_RS07295 (RZ534_07295) abrB 1419749..1420027 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RZ534_RS07300 (RZ534_07300) - 1420172..1421461 (+) 1290 WP_008345127.1 ATP-binding protein -
  RZ534_RS07305 (RZ534_07305) - 1421489..1422331 (+) 843 WP_249670218.1 gamma-glutamylcyclotransferase -
  RZ534_RS07310 (RZ534_07310) - 1422369..1423037 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=892130 RZ534_RS07295 WP_008345129.1 1419749..1420027(+) (abrB) [Bacillus altitudinis strain RS1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=892130 RZ534_RS07295 WP_008345129.1 1419749..1420027(+) (abrB) [Bacillus altitudinis strain RS1]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554