Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AAC934_RS08095 Genome accession   NZ_CP152362
Coordinates   1536672..1537697 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain LP     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531672..1542697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS08060 (AAC934_08060) ylbE 1531972..1532211 (+) 240 WP_003232231.1 YlbE-like family protein -
  AAC934_RS08065 (AAC934_08065) ylbF 1532327..1532776 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAC934_RS08070 (AAC934_08070) ylbG 1532831..1533103 (+) 273 WP_015715839.1 YlbG family protein -
  AAC934_RS08075 (AAC934_08075) rsmD 1533426..1533980 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAC934_RS08080 (AAC934_08080) coaD 1533985..1534470 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAC934_RS08085 (AAC934_08085) spoVV 1534481..1535707 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  AAC934_RS08090 (AAC934_08090) ylbK 1535888..1536670 (+) 783 WP_003232221.1 patatin family protein -
  AAC934_RS08095 (AAC934_08095) sepM 1536672..1537697 (+) 1026 WP_003245451.1 protease DdcP Regulator
  AAC934_RS08100 (AAC934_08100) ylbM 1537714..1538961 (-) 1248 WP_174223259.1 nucleotidyltransferase -
  AAC934_RS08105 (AAC934_08105) - 1538958..1539143 (-) 186 WP_003232215.1 hypothetical protein -
  AAC934_RS08110 (AAC934_08110) ylbN 1539171..1539689 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  AAC934_RS08115 (AAC934_08115) rpmF 1539711..1539890 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  AAC934_RS08120 (AAC934_08120) gerR 1540036..1540617 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  AAC934_RS08125 (AAC934_08125) ylbP 1540674..1541156 (-) 483 WP_014476736.1 N-acetyltransferase -
  AAC934_RS08130 (AAC934_08130) - 1541316..1542212 (+) 897 WP_015252144.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=892106 AAC934_RS08095 WP_003245451.1 1536672..1537697(+) (sepM) [Bacillus subtilis strain LP]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=892106 AAC934_RS08095 WP_003245451.1 1536672..1537697(+) (sepM) [Bacillus subtilis strain LP]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGGTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402