Detailed information NTG0892084

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R0513_RS05900
• Genome accession: NZ_CP136638
• Coordinates: 1118092..1119042 (+)
• Length: 316 a.a.
• NCBI ID: WP_041160151.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain S2-20
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1113092..1124042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R0513_RS05885 (R0513_05885)	-	1113948..1115870 (-)	1923	WP_041160149.1	hypothetical protein	-
R0513_RS05890 (R0513_05890)	-	1115946..1117220 (+)	1275	WP_041160150.1	DUF2972 domain-containing protein	-
R0513_RS05895 (R0513_05895)	-	1117184..1118033 (-)	850	Protein_1145	glycosyltransferase family 2 protein	-
R0513_RS05900 (R0513_05900)	waaF	1118092..1119042 (+)	951	WP_041160151.1	lipopolysaccharide heptosyltransferase II	Regulator
R0513_RS05905 (R0513_05905)	-	1119028..1119792 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
R0513_RS05910 (R0513_05910)	gmhA	1119792..1120352 (-)	561	WP_041160152.1	D-sedoheptulose 7-phosphate isomerase	-
R0513_RS05915 (R0513_05915)	rfaE1	1120349..1121734 (-)	1386	WP_318307828.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R0513_RS05920 (R0513_05920)	rfaD	1121727..1122680 (-)	954	WP_318307829.1	ADP-glyceromanno-heptose 6-epimerase	-
R0513_RS05925 (R0513_05925)	gmhB	1122681..1123242 (-)	562	Protein_1151	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R0513_RS05930 (R0513_05930)	-	1123323..1123625 (+)	303	WP_002852762.1	c-type cytochrome	-
R0513_RS05935 (R0513_05935)	ccoS	1123648..1123854 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36292.91 Da
• Isoelectric Point: 10.2419

>NTDB_id=892084 R0513_RS05900 WP_041160151.1 1118092..1119042(+) (waaF) [Campylobacter jejuni strain S2-20]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=892084 R0513_RS05900 WP_041160151.1 1118092..1119042(+) (waaF) [Campylobacter jejuni strain S2-20]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCATATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949