Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   AAC934_RS05740 Genome accession   NZ_CP152362
Coordinates   1111645..1115037 (+) Length   1130 a.a.
NCBI ID   WP_342625007.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106645..1120037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS05730 (AAC934_05730) addA 1106703..1110401 (+) 3699 WP_342625005.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  AAC934_RS05735 (AAC934_05735) sbcD 1110473..1111648 (+) 1176 WP_342625006.1 exonuclease subunit SbcD -
  AAC934_RS05740 (AAC934_05740) sbcC 1111645..1115037 (+) 3393 WP_342625007.1 exonuclease subunit SbcC Machinery gene
  AAC934_RS05745 (AAC934_05745) hlpB 1115051..1115353 (+) 303 WP_015252406.1 HNH nuclease-like protein HlpB -
  AAC934_RS05750 (AAC934_05750) gerPF 1115390..1115608 (-) 219 WP_003233096.1 spore germination protein -
  AAC934_RS05755 (AAC934_05755) gerPE 1115640..1116041 (-) 402 WP_010886467.1 spore germination protein GerPE -
  AAC934_RS05760 (AAC934_05760) gerPD 1116041..1116217 (-) 177 WP_003233093.1 spore germination protein GerPD -
  AAC934_RS05765 (AAC934_05765) gerPC 1116214..1116831 (-) 618 WP_014479393.1 spore germination protein GerPC -
  AAC934_RS05770 (AAC934_05770) gerPB 1116854..1117087 (-) 234 WP_003233090.1 spore germination protein GerPB -
  AAC934_RS05775 (AAC934_05775) gerPA 1117102..1117323 (-) 222 WP_003233088.1 spore germination protein -
  AAC934_RS05780 (AAC934_05780) yisI 1117746..1117916 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  AAC934_RS05785 (AAC934_05785) yisJ 1118061..1118984 (-) 924 WP_342625008.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128596.06 Da        Isoelectric Point: 5.2420

>NTDB_id=892084 AAC934_RS05740 WP_342625007.1 1111645..1115037(+) (sbcC) [Bacillus subtilis strain LP]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTF
ALQSNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAETRLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKGLADR
TAFFQQKHEEYEAWRQHKSEKEPELLSKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSDERKSCQQAAEMALLIRQTEEQIKKEKKRSDELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEETRKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPAASVHETYEADSH
LEEDIKQTDVLLTEAAALSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFENQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIITELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLQESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLGKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=892084 AAC934_RS05740 WP_342625007.1 1111645..1115037(+) (sbcC) [Bacillus subtilis strain LP]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATACTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGAATCTTAAATCACGCCGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGTCGAATCATCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTGAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGATGAGCATACCGTACTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTGGAGG
AGCTCTTGGGTCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAGTTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCTAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCTGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAACCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGGTTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTATC
CAAACAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAAG
CTGACCTCCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTAGAGACCGTAACAGATCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAGCAGCAGCTCAAATCCCTGCAGGTGACATCCGATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAAATGGCATTGCTCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGACGAATTGAACCTCG
TGCTTCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCAGTGCAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGACTAGAAAGAG
CCAACACACGCTTCACTTACAGCGCGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GTAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCAGCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATTAAACAGACAGATGTATTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCGCAGAACCTTGAAGCGG
CAGCTTCCTTCGAAAATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATCGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCACCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCA
GGAATCGGGACACCGGCTTGAGCGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
TGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGGAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCTGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATTGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCTTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGATGCGAATGGAGGCGTAAGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-253)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.496

100

0.985