Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R0513_RS03365 Genome accession   NZ_CP136638
Coordinates   643584..644021 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain S2-20     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638584..649021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS03335 (R0513_03335) - 639207..640229 (+) 1023 WP_240373841.1 sensor histidine kinase KdpD -
  R0513_RS03340 (R0513_03340) - 640253..640885 (+) 633 WP_243026489.1 DUF4118 domain-containing protein -
  R0513_RS03345 (R0513_03345) - 640872..641003 (+) 132 WP_256379349.1 hypothetical protein -
  R0513_RS03350 (R0513_03350) uvrB 640998..642971 (-) 1974 WP_041160076.1 excinuclease ABC subunit UvrB -
  R0513_RS03355 (R0513_03355) - 643125..643355 (+) 231 WP_002852327.1 hypothetical protein -
  R0513_RS03360 (R0513_03360) - 643345..643587 (+) 243 WP_002854947.1 hypothetical protein -
  R0513_RS03365 (R0513_03365) Cj0683 643584..644021 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R0513_RS03370 (R0513_03370) priA 644003..645856 (+) 1854 WP_079378793.1 primosomal protein N' -
  R0513_RS03375 (R0513_03375) cipA 645866..647261 (-) 1396 Protein_656 DUF2972 domain-containing protein -
  R0513_RS03380 (R0513_03380) ispG 647407..648480 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=892079 R0513_RS03365 WP_002852324.1 643584..644021(+) (Cj0683) [Campylobacter jejuni strain S2-20]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=892079 R0513_RS03365 WP_002852324.1 643584..644021(+) (Cj0683) [Campylobacter jejuni strain S2-20]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1