Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV04_RS02480 Genome accession   NZ_AP024893
Coordinates   515823..516341 (+) Length   172 a.a.
NCBI ID   WP_042480533.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 510823..521341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS02470 - 511163..514018 (+) 2856 WP_171137296.1 pitrilysin family protein -
  OCV04_RS02475 gshA 514144..515709 (+) 1566 WP_171137297.1 glutamate--cysteine ligase -
  OCV04_RS02480 luxS 515823..516341 (+) 519 WP_042480533.1 S-ribosylhomocysteine lyase Regulator
  OCV04_RS02485 - 516412..517686 (-) 1275 WP_171137298.1 HlyC/CorC family transporter -
  OCV04_RS02490 - 517787..518581 (-) 795 WP_102940496.1 inner membrane protein YpjD -
  OCV04_RS02495 ffh 518828..520213 (+) 1386 WP_102940495.1 signal recognition particle protein -
  OCV04_RS02500 rpsP 520465..520713 (+) 249 WP_102940494.1 30S ribosomal protein S16 -
  OCV04_RS02505 rimM 520741..521295 (+) 555 WP_102940493.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19060.99 Da        Isoelectric Point: 5.0360

>NTDB_id=89207 OCV04_RS02480 WP_042480533.1 515823..516341(+) (luxS) [Vibrio plantisponsor strain CECT 7581]
MPLLDSFTVDHTRMNAPAVRVAKKMQTPKGDTITVFDLRFTMPNKAILSEKGIHTLEHLYAGFMRAHLNGSNVEIIDISP
MGCRTGFYMSLIGTPTEQEVADAWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKTVIAAGISVNRNDELA
LPEDMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89207 OCV04_RS02480 WP_042480533.1 515823..516341(+) (luxS) [Vibrio plantisponsor strain CECT 7581]
ATGCCATTACTAGACAGCTTTACCGTTGACCATACTCGAATGAATGCACCTGCGGTACGTGTAGCTAAGAAAATGCAAAC
CCCTAAGGGCGATACCATTACTGTTTTTGACCTGCGCTTTACTATGCCAAACAAAGCGATCTTGTCTGAAAAAGGTATTC
ATACCCTTGAGCATCTTTATGCTGGTTTTATGCGTGCGCACCTAAACGGTTCAAATGTTGAGATTATTGACATTTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCCTGATTGGTACGCCAACGGAGCAAGAAGTGGCTGATGCTTGGCTTGCTGC
AATGCAAGATGTACTAAAAGTGGAATCTCAAAACAAGATCCCTGAACTTAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCGCTAGAAGAAGCGAAGGAAATTGCTAAAACTGTTATCGCTGCGGGTATCAGTGTTAACCGTAACGATGAATTAGCT
TTGCCAGAAGATATGCTGAAAGAGTTGAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.228

99.419

0.907

Multiple sequence alignment