Detailed information NTG0892068

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RAS18_RS18660
• Genome accession: NZ_CP136635
• Coordinates: 3720809..3721951 (+)
• Length: 380 a.a.
• NCBI ID: WP_406621057.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus subsp. globigii strain Hab-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3715809..3726951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAS18_RS18640	-	3716282..3716983 (+)	702	WP_406621053.1	bacteriocin biosynthesis protein AlbG	-
RAS18_RS18645	-	3716990..3718366 (-)	1377	WP_406621054.1	YncE family protein	-
RAS18_RS18650	-	3718406..3719767 (-)	1362	WP_406621055.1	YncE family protein	-
RAS18_RS18655	-	3720044..3720598 (+)	555	WP_406621056.1	YdhK family protein	-
RAS18_RS18660	rapF	3720809..3721951 (+)	1143	WP_406621057.1	aspartate phosphatase	Regulator
RAS18_RS18665	-	3721935..3722054 (+)	120	WP_406621058.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
RAS18_RS18670	-	3722211..3722621 (+)	411	Protein_3626	YbaK/EbsC family protein	-
RAS18_RS18675	speB	3722654..3723526 (-)	873	WP_406622034.1	agmatinase	-
RAS18_RS18680	speE	3723587..3724417 (-)	831	WP_003326486.1	spermidine synthase	-
RAS18_RS18685	-	3724622..3726697 (+)	2076	WP_406621059.1	transglycosylase domain-containing protein	-
RAS18_RS18690	-	3726739..3726894 (-)	156	WP_406621060.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45547.21 Da
• Isoelectric Point: 4.8562

>NTDB_id=892068 RAS18_RS18660 WP_406621057.1 3720809..3721951(+) (rapF) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MTGVISSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDIHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDHREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQQNFESA
IEYVKKSIDVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSLAAGDTVYLMEFEFLESLYLSGPDEQAIE
KCFVFLESKMMYADIEDFALDVAKYYHQQEIYKKASTYFLKVEEARQHIQGGVNLYELEV

Nucleotide

• Length: 1143 bp

>NTDB_id=892068 RAS18_RS18660 WP_406621057.1 3720809..3721951(+) (rapF) [Bacillus atrophaeus subsp. globigii strain Hab-5]
GTGACAGGCGTCATATCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATATTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCACCGCGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACACTTTATAATATTGCCCTTTGCAAGCAAAACCAACAAAACTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATAGATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCATTAGCTG
CCGGAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAACAAGCAATAGAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTTGATGTTGCTAAGTATTATCA
TCAGCAGGAAATTTACAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAATTGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.528	100	0.797
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	100	0.571