Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAC934_RS03025 Genome accession   NZ_CP152362
Coordinates   569859..570500 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain LP     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 564859..575500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS02995 (AAC934_02995) ydfE 566055..566678 (-) 624 WP_029725823.1 flavin reductase family protein -
  AAC934_RS03000 (AAC934_03000) ydfF 566767..567447 (+) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  AAC934_RS03005 (AAC934_03005) ydfG 567527..567970 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  AAC934_RS03010 (AAC934_03010) - 568056..568235 (-) 180 WP_010886421.1 hypothetical protein -
  AAC934_RS03015 (AAC934_03015) - 568232..568375 (-) 144 WP_003243880.1 hypothetical protein -
  AAC934_RS03020 (AAC934_03020) ydfH 568643..569866 (+) 1224 WP_032678641.1 two-component system sensor histidine kinase YdfH -
  AAC934_RS03025 (AAC934_03025) vraR 569859..570500 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  AAC934_RS03030 (AAC934_03030) ydfJ 570616..572790 (+) 2175 WP_080528970.1 MMPL family transporter -
  AAC934_RS03035 (AAC934_03035) cesA 573216..574118 (-) 903 WP_080528971.1 carboxylesterase -
  AAC934_RS03040 (AAC934_03040) ydfK 574321..575010 (-) 690 WP_080528972.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=892067 AAC934_RS03025 WP_003244318.1 569859..570500(+) (vraR) [Bacillus subtilis strain LP]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=892067 AAC934_RS03025 WP_003244318.1 569859..570500(+) (vraR) [Bacillus subtilis strain LP]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362