Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RAS18_RS13790 Genome accession   NZ_CP136635
Coordinates   2741201..2741947 (-) Length   248 a.a.
NCBI ID   WP_406620710.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2736201..2746947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS13765 mreC 2736597..2737469 (-) 873 WP_010789375.1 rod shape-determining protein MreC -
  RAS18_RS13770 mreB 2737500..2738513 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  RAS18_RS13775 radC 2738605..2739300 (-) 696 WP_003325238.1 DNA repair protein RadC -
  RAS18_RS13780 - 2739335..2739904 (-) 570 WP_061572659.1 nucleoside triphosphate pyrophosphatase -
  RAS18_RS13785 - 2740051..2741067 (-) 1017 WP_406620709.1 SPOR domain-containing protein -
  RAS18_RS13790 comC 2741201..2741947 (-) 747 WP_406620710.1 prepilin peptidase Machinery gene
  RAS18_RS13795 - 2742101..2743399 (-) 1299 WP_406620711.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  RAS18_RS13800 valS 2743457..2746099 (-) 2643 WP_106043969.1 valine--tRNA ligase -
  RAS18_RS13805 - 2746546..2746737 (+) 192 WP_061572654.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26769.45 Da        Isoelectric Point: 8.8184

>NTDB_id=892052 RAS18_RS13790 WP_406620710.1 2741201..2741947(-) (comC) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MVFVMFILGLIFGSFFYAAGCRIPLQISIVKPRSSCSFCRYPLSYAELIPVFSFFLQKGRCKSCSQKLSLMYPAAELCTA
CLFTAAYLRFGLSGELVVALLLISLLSIIVASDIHYMLIPDSVLVFFLPFLIAGRMIAPLHNWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFILAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAMF

Nucleotide


Download         Length: 747 bp        

>NTDB_id=892052 RAS18_RS13790 WP_406620710.1 2741201..2741947(-) (comC) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGTTTTTGTCATGTTTATCCTTGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTGTAAAACCGCGCTCATCCTGTTCATTTTGCCGCTATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTTCACAAAAACTGTCGTTGATGTATCCGGCAGCAGAGCTTTGTACAGCA
TGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTGTTGTCGCGCTGCTGCTCATATCCTTGCTGAG
CATTATCGTGGCTTCAGATATTCACTATATGCTGATCCCCGACAGCGTTCTGGTGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCATAATTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGTTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGGATCGGGGGCGGCGATATTAAGTTATTTGCCGTTTTGGGGATCGCACTTGGTGTTAAAAT
GCTGATCGCAGCCTTTATCCTTGCTGTCTTTATAGGTATGCTTTACGGCGCATGCGGTACGCTGTCAGGAAAGCTCGATC
GTAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTGAGTTATCTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATGTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617