Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RAS18_RS12730 Genome accession   NZ_CP136635
Coordinates   2553577..2554344 (-) Length   255 a.a.
NCBI ID   WP_150223150.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2548577..2559344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS12710 - 2548736..2549548 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  RAS18_RS12715 ccpN 2549573..2550211 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  RAS18_RS12720 glyS 2550359..2552398 (-) 2040 WP_406620650.1 glycine--tRNA ligase subunit beta -
  RAS18_RS12725 glyQ 2552391..2553278 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  RAS18_RS12730 recO 2553577..2554344 (-) 768 WP_150223150.1 DNA repair protein RecO Machinery gene
  RAS18_RS12735 - 2554381..2554524 (-) 144 WP_004429487.1 YqzL family protein -
  RAS18_RS12740 era 2554682..2555587 (-) 906 WP_004429485.1 GTPase Era -
  RAS18_RS12745 - 2555568..2555978 (-) 411 WP_010789236.1 cytidine deaminase -
  RAS18_RS12750 - 2556092..2556469 (-) 378 WP_406620651.1 diacylglycerol kinase family protein -
  RAS18_RS12755 ybeY 2556450..2556923 (-) 474 WP_406620652.1 rRNA maturation RNase YbeY -
  RAS18_RS12760 - 2556924..2559059 (-) 2136 WP_406620653.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=892044 RAS18_RS12730 WP_150223150.1 2553577..2554344(-) (recO) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPEINHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=892044 RAS18_RS12730 WP_150223150.1 2553577..2554344(-) (recO) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTACGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCCGAAATCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTAGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTGAAGCGGGTCATTGACTTATATTACGAAGAATATTCCGGTATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.549

100

0.925