Detailed information NTG0089204

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCV04_RS02340
• Genome accession: NZ_AP024893
• Coordinates: 488949..489947 (+)
• Length: 332 a.a.
• NCBI ID: WP_102943031.1
• Uniprot ID: -
• Organism: Vibrio plantisponsor strain CECT 7581
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 483949..494947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV04_RS02305	ftsB	484063..484344 (+)	282	WP_042480612.1	cell division protein FtsB	-
OCV04_RS02310	ispD	484344..485039 (+)	696	WP_171137285.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCV04_RS02315	ispF	485042..485518 (+)	477	WP_102943026.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCV04_RS02320	truD	485529..486575 (+)	1047	WP_102943027.1	tRNA pseudouridine(13) synthase TruD	-
OCV04_RS02325	surE	486568..487335 (+)	768	WP_102943028.1	5'/3'-nucleotidase SurE	-
OCV04_RS02330	-	487328..487954 (+)	627	WP_102943029.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCV04_RS02335	-	487954..488877 (+)	924	WP_171137286.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCV04_RS02340	rpoS	488949..489947 (+)	999	WP_102943031.1	RNA polymerase sigma factor RpoS	Regulator
OCV04_RS02345	mutS	490031..492616 (-)	2586	WP_171137287.1	DNA mismatch repair protein MutS	-
OCV04_RS02350	cysM	492818..493708 (-)	891	WP_171137288.1	cysteine synthase CysM	-
OCV04_RS02355	cysP	493922..494923 (+)	1002	WP_102943034.1	thiosulfate ABC transporter substrate-binding protein CysP	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38135.98 Da
• Isoelectric Point: 4.3536

>NTDB_id=89204 OCV04_RS02340 WP_102943031.1 488949..489947(+) (rpoS) [Vibrio plantisponsor strain CECT 7581]
MSISNTVTKEEEFDLDIDSTDVVEVDAKLTAEDDDIDQTEDIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARR
ALRGDEAARRRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT
RTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDIN
NSDPEVSTQDDDIRDSLIAWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGL
NMESLFNVEVEA

Nucleotide

• Length: 999 bp

>NTDB_id=89204 OCV04_RS02340 WP_102943031.1 488949..489947(+) (rpoS) [Vibrio plantisponsor strain CECT 7581]
ATGAGTATCAGCAATACAGTAACCAAGGAAGAAGAGTTTGACTTAGATATTGATTCAACAGATGTTGTTGAAGTGGATGC
TAAGCTAACTGCCGAAGACGATGACATTGACCAAACGGAAGATATCCGTGAAGAGTTCGATGCGTCAACCAAAAGCTTAG
ATGCAACGCAAATGTATCTCAGCGAGATTGGTTTCTCACCTCTTTTAACCGCCGAAGAAGAAGTTCTTTATGCTCGCCGA
GCACTTCGTGGAGACGAAGCTGCAAGACGACGCATGATAGAGAGCAACCTGCGTCTGGTGGTGAAAATATCCCGTCGTTA
TAGCAATCGTGGTCTCGCTTTACTGGATCTTATTGAAGAAGGTAACTTGGGCTTGATCCGTGCGGTTGAAAAATTCGATC
CAGAACGTGGATTCCGCTTTTCAACCTACGCTACTTGGTGGATCCGTCAAACGATTGAACGTGCGCTGATGAATCAAACT
CGTACGATTCGTCTACCAATTCACGTAGTTAAAGAGCTCAATATCTATCTACGTACCGCACGTGAACTTTCGCAAAAACT
CGACCATGAACCAACAGCGGAAGAGATCGCCTCTGAACTGGATAAACCGGTTGATGATGTCAGCAAGATGCTGCGTTTAA
ATGAACGCATCAGCTCTGTAGATACACCTATTGGTGGTGACGGGGATAAAGCGCTACTCGATATTATTCCAGACATTAAC
AACTCCGATCCTGAAGTTTCGACTCAAGACGATGACATCCGTGATTCATTGATTGCGTGGCTTGAAGAGTTAAATCCTAA
ACAAAAAGAAGTGTTAGCACGACGCTTTGGTTTGTTAGGTTATGAGCCATCAACGTTGGAAGAAGTTGGACGTGAAATCA
ACTTGACTCGTGAACGTGTTCGTCAGATTCAAGTAGAAGGTTTACGCCGTTTGAGAGAGATTCTGATGAAACAAGGTTTG
AACATGGAATCTTTGTTCAACGTGGAAGTGGAAGCTTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (172-245)

• Sigma-70, region 4 (Sigma70_r4) (260-313)

• Sigma-70 region 2 (Sigma70_r2) (92-161)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (54-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.048	100	0.87