Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RAS18_RS11150 Genome accession   NZ_CP136635
Coordinates   2270500..2271108 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2265500..2276108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS11110 - 2266609..2267115 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  RAS18_RS11115 - 2267265..2267684 (+) 420 WP_106044269.1 Hsp20/alpha crystallin family protein -
  RAS18_RS11120 - 2267704..2268093 (-) 390 WP_061573002.1 YppG family protein -
  RAS18_RS11125 - 2268283..2268471 (+) 189 WP_035175493.1 YppF family protein -
  RAS18_RS11130 - 2268502..2268837 (-) 336 WP_406622004.1 YppE family protein -
  RAS18_RS11135 - 2268918..2269163 (-) 246 WP_150223338.1 DUF5446 family protein -
  RAS18_RS11140 sspM 2269364..2269468 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  RAS18_RS11145 - 2269495..2270457 (-) 963 WP_315915067.1 DUF2515 domain-containing protein -
  RAS18_RS11150 recU 2270500..2271108 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  RAS18_RS11155 - 2271146..2273899 (+) 2754 WP_406620567.1 PBP1A family penicillin-binding protein -
  RAS18_RS11160 - 2273998..2274489 (-) 492 WP_406620568.1 YpoC family protein -
  RAS18_RS11165 nth 2274486..2275145 (-) 660 WP_003325645.1 endonuclease III -
  RAS18_RS11170 dnaD 2275164..2275862 (-) 699 WP_061572996.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=892032 RAS18_RS11150 WP_010789030.1 2270500..2271108(+) (recU) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=892032 RAS18_RS11150 WP_010789030.1 2270500..2271108(+) (recU) [Bacillus atrophaeus subsp. globigii strain Hab-5]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCATAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGCCTTTACAAAGGGCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCATTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901