Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RAS18_RS07825 Genome accession   NZ_CP136635
Coordinates   1520045..1520323 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515045..1525323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS07805 - 1516241..1517155 (+) 915 WP_406621810.1 ketopantoate reductase family protein -
  RAS18_RS07810 - 1517185..1518417 (-) 1233 WP_406621811.1 aminopeptidase -
  RAS18_RS07815 - 1518519..1518653 (-) 135 WP_010788482.1 protein YkpC -
  RAS18_RS07820 mreBH 1518755..1519762 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  RAS18_RS07825 abrB 1520045..1520323 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  RAS18_RS07830 - 1520536..1521822 (+) 1287 WP_406621812.1 ATP-binding protein -
  RAS18_RS07835 - 1521835..1522674 (+) 840 WP_150223456.1 gamma-glutamylcyclotransferase -
  RAS18_RS07840 ktrC 1522724..1523389 (+) 666 WP_061571456.1 Ktr system potassium transporter KtrC -
  RAS18_RS07845 ade 1523558..1525285 (+) 1728 WP_406621813.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=892027 RAS18_RS07825 WP_003329146.1 1520045..1520323(+) (abrB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=892027 RAS18_RS07825 WP_003329146.1 1520045..1520323(+) (abrB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATATGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576