Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RAS18_RS07595 Genome accession   NZ_CP136635
Coordinates   1478480..1478944 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473480..1483944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS07575 - 1473926..1475746 (+) 1821 WP_406621799.1 PAS domain-containing protein -
  RAS18_RS07580 - 1475769..1476938 (-) 1170 WP_061571420.1 aminotransferase A -
  RAS18_RS07585 - 1477146..1477307 (-) 162 WP_003327276.1 hypothetical protein -
  RAS18_RS07590 cheV 1477516..1478427 (+) 912 WP_061571421.1 chemotaxis protein CheV -
  RAS18_RS07595 kre 1478480..1478944 (-) 465 WP_003327274.1 YkyB family protein Regulator
  RAS18_RS07600 - 1479067..1480362 (-) 1296 WP_406621800.1 MFS transporter -
  RAS18_RS07605 - 1480438..1480935 (-) 498 WP_106045094.1 L,D-transpeptidase family protein -
  RAS18_RS07610 - 1481071..1481931 (-) 861 WP_406621801.1 metallophosphoesterase -
  RAS18_RS07615 fadH 1482078..1482842 (+) 765 WP_061571425.1 2,4-dienoyl-CoA reductase -
  RAS18_RS07620 - 1482900..1483031 (+) 132 Protein_1449 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=892025 RAS18_RS07595 WP_003327274.1 1478480..1478944(-) (kre) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=892025 RAS18_RS07595 WP_003327274.1 1478480..1478944(-) (kre) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942