Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RAS18_RS06380 Genome accession   NZ_CP136635
Coordinates   1266609..1267034 (+) Length   141 a.a.
NCBI ID   WP_082786730.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1261609..1272034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS06345 - 1261866..1262366 (+) 501 WP_406621698.1 hypothetical protein -
  RAS18_RS06350 - 1262440..1262790 (+) 351 WP_406621699.1 hypothetical protein -
  RAS18_RS06355 - 1262781..1263395 (-) 615 Protein_1196 site-specific integrase -
  RAS18_RS06360 - 1263586..1263759 (+) 174 WP_169800246.1 hypothetical protein -
  RAS18_RS06365 - 1264832..1265113 (-) 282 WP_061571258.1 hypothetical protein -
  RAS18_RS06370 - 1265749..1266078 (-) 330 WP_082786675.1 hypothetical protein -
  RAS18_RS06375 - 1266140..1266418 (-) 279 WP_106045227.1 hypothetical protein -
  RAS18_RS06380 nucA/comI 1266609..1267034 (+) 426 WP_082786730.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RAS18_RS06385 - 1267172..1267834 (+) 663 WP_010788290.1 MgtC/SapB family protein -
  RAS18_RS06390 - 1267893..1268126 (-) 234 WP_406621700.1 hypothetical protein -
  RAS18_RS06395 - 1268340..1268552 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  RAS18_RS06400 - 1268612..1268827 (-) 216 WP_072053284.1 spore coat protein -
  RAS18_RS06405 - 1269142..1270542 (+) 1401 WP_406621701.1 polysaccharide deacetylase family protein -
  RAS18_RS06410 - 1270594..1271067 (-) 474 WP_406621702.1 YjfA family protein -
  RAS18_RS06415 - 1271203..1271613 (-) 411 WP_406621703.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15468.36 Da        Isoelectric Point: 4.7462

>NTDB_id=892021 RAS18_RS06380 WP_082786730.1 1266609..1267034(+) (nucA/comI) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYPDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=892021 RAS18_RS06380 WP_082786730.1 1266609..1267034(+) (nucA/comI) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAAAAAATGGATCACAAGCTTATTTCTGACCGCAGCGATACTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGACCAGGTTCTTTACTTTCCGTTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGACATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCAGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATCCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

89.362

0.539