Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RAS18_RS06005 Genome accession   NZ_CP136635
Coordinates   1203484..1204437 (+) Length   317 a.a.
NCBI ID   WP_061571215.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198484..1209437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS05980 argF 1200294..1201247 (+) 954 WP_106045278.1 ornithine carbamoyltransferase -
  RAS18_RS05985 - 1201347..1201526 (+) 180 WP_003327605.1 YjzC family protein -
  RAS18_RS05990 - 1201554..1201742 (-) 189 WP_003327604.1 YjzD family protein -
  RAS18_RS05995 - 1202002..1202736 (+) 735 WP_061571213.1 hypothetical protein -
  RAS18_RS06000 - 1202819..1203394 (+) 576 WP_406621675.1 hypothetical protein -
  RAS18_RS06005 med 1203484..1204437 (+) 954 WP_061571215.1 BMP family ABC transporter substrate-binding protein Regulator
  RAS18_RS06010 comZ 1204452..1204643 (+) 192 WP_010788228.1 ComZ family protein Regulator
  RAS18_RS06015 - 1204673..1204900 (-) 228 WP_003327598.1 hypothetical protein -
  RAS18_RS06020 fabH 1205072..1206010 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  RAS18_RS06025 fabF 1206032..1207270 (+) 1239 WP_094231800.1 beta-ketoacyl-ACP synthase II -
  RAS18_RS06030 - 1207348..1208133 (+) 786 WP_406621676.1 DUF2268 domain-containing protein -
  RAS18_RS06035 - 1208323..1209309 (+) 987 WP_214917956.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35356.81 Da        Isoelectric Point: 4.4404

>NTDB_id=892015 RAS18_RS06005 WP_061571215.1 1203484..1204437(+) (med) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGVNLLFGHGSEYEEMFNLVSEDYPDMEFVVSNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYGIIAEQYSKGTLESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNQTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=892015 RAS18_RS06005 WP_061571215.1 1203484..1204437(+) (med) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACCATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTATTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCATAAGAGAGGGGTAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCAGACATGGAATTTGTCGTTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAACGGAGAAGCGA
TGGGTTTTTTCGGCGGGATGACAGCCGCGCATATGTCCAAAACCAATCAAATCGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAATATGAAAATCCGGACATCACCATCAATACGAAATATACAGACCACTG
GGATGACGATACCACGGCCGTGAAACTTTACGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTCACAGACCAGTCTGATCTG
GGCGAGAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAAGGG
CACTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTTGTCGACA
AAGCCTTCCAAGATAAAATTGCCGCTCTTATCAAAACGTATAATCAAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

88.013

100

0.88