Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RAS18_RS05605 Genome accession   NZ_CP136635
Coordinates   1127281..1127856 (+) Length   191 a.a.
NCBI ID   WP_061571154.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122281..1132856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS05580 - 1122710..1123225 (-) 516 WP_370499821.1 methyl-accepting chemotaxis protein -
  RAS18_RS05585 - 1123514..1123891 (-) 378 Protein_1043 protoglobin domain-containing protein -
  RAS18_RS05590 - 1124167..1125759 (-) 1593 WP_406621628.1 FAD-dependent oxidoreductase -
  RAS18_RS05595 - 1125833..1126690 (+) 858 WP_003327697.1 SDR family oxidoreductase -
  RAS18_RS05600 - 1126721..1126954 (-) 234 WP_010788159.1 IDEAL domain-containing protein -
  RAS18_RS05605 comK 1127281..1127856 (+) 576 WP_061571154.1 competence protein ComK Regulator
  RAS18_RS05610 - 1128063..1128335 (+) 273 WP_061571155.1 excalibur calcium-binding domain-containing protein -
  RAS18_RS05615 - 1128363..1129850 (-) 1488 WP_406621629.1 sodium:solute symporter -
  RAS18_RS05620 - 1129847..1130047 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  RAS18_RS05625 - 1130172..1130537 (-) 366 WP_061571157.1 hypothetical protein -
  RAS18_RS05630 - 1130692..1131315 (+) 624 WP_406621630.1 TVP38/TMEM64 family protein -
  RAS18_RS05635 lepB 1131318..1131818 (+) 501 WP_061571159.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22295.50 Da        Isoelectric Point: 8.1215

>NTDB_id=892012 RAS18_RS05605 WP_061571154.1 1127281..1127856(+) (comK) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MSQKTDAPLDTYEVNSSTIAVLPEQMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=892012 RAS18_RS05605 WP_061571154.1 1127281..1127856(+) (comK) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACAGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATATCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGTACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAAAGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88