Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RAS18_RS04470 Genome accession   NZ_CP136635
Coordinates   909814..910605 (+) Length   263 a.a.
NCBI ID   WP_061573408.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 904814..915605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS04440 - 905616..906671 (+) 1056 WP_150224927.1 iron ABC transporter permease -
  RAS18_RS04445 - 906789..907670 (+) 882 WP_406621531.1 PhzF family phenazine biosynthesis isomerase -
  RAS18_RS04450 - 907751..908335 (+) 585 WP_406621533.1 nitroreductase -
  RAS18_RS04455 - 908374..908565 (-) 192 WP_004430587.1 YfhD family protein -
  RAS18_RS04460 - 908643..908753 (-) 111 WP_003223230.1 YfhE family protein -
  RAS18_RS04465 - 908812..909723 (-) 912 WP_406621542.1 TIGR01777 family oxidoreductase -
  RAS18_RS04470 recX 909814..910605 (+) 792 WP_061573408.1 recombination regulator RecX Regulator
  RAS18_RS04475 - 910613..910939 (+) 327 WP_061573409.1 YfhH family protein -
  RAS18_RS04480 - 911075..912274 (+) 1200 WP_061573410.1 MFS transporter -
  RAS18_RS04485 - 912315..912467 (-) 153 WP_004430596.1 small, acid-soluble spore protein K -
  RAS18_RS04490 - 912584..912853 (+) 270 WP_004430597.1 YfhJ family protein -
  RAS18_RS04495 - 912981..913517 (+) 537 WP_406621546.1 SH3 domain-containing protein -
  RAS18_RS04500 - 913693..914040 (+) 348 WP_406621547.1 SdpI family protein -
  RAS18_RS04505 - 914027..914893 (+) 867 WP_406621548.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31012.25 Da        Isoelectric Point: 7.3908

>NTDB_id=892007 RAS18_RS04470 WP_061573408.1 909814..910605(+) (recX) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MPFITKITTQKKTTERFNIFLDNKYAFSVDADVLVKFDLKKGKELDDLDIVEIQYGDEVKKGFNRALEFLSYRMRSTKEV
TDYLKKKEISDPAITEIIHKLNDYRYLNDKEFAEAYASTHKKTNGKGPDVLYKELRSKGIDDDTIKETLSTFSFEEQTEE
ALKHIGKILKKEKKLSTKEIKQRAQMFLQRKGFSFDVITAALEQTEYANDEDTEREALRQHAEKALRKYRYDGSYESKMK
VKQYLFRKGFSLDMIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=892007 RAS18_RS04470 WP_061573408.1 909814..910605(+) (recX) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGCCGTTTATCACGAAAATCACAACGCAGAAAAAAACGACCGAGCGCTTTAACATTTTTCTCGATAATAAATATGCTTT
CAGTGTGGATGCGGACGTACTCGTCAAATTCGACCTGAAAAAAGGAAAAGAACTCGACGACCTTGATATCGTTGAGATTC
AATACGGGGATGAAGTAAAGAAAGGCTTTAACCGGGCGCTTGAATTTTTATCATACCGGATGCGCTCAACAAAAGAGGTA
ACGGACTATTTAAAGAAAAAAGAAATATCAGATCCGGCCATTACAGAAATCATCCATAAGCTGAATGATTATCGCTATCT
GAATGATAAAGAGTTCGCAGAAGCTTATGCGAGCACACATAAGAAAACAAATGGAAAGGGACCGGACGTTCTTTATAAAG
AGTTAAGGTCAAAGGGGATCGACGATGATACGATCAAAGAGACATTGAGCACATTTTCTTTTGAGGAACAGACAGAAGAG
GCGCTGAAGCATATCGGAAAAATCTTGAAAAAAGAAAAAAAGCTCTCTACAAAAGAAATCAAGCAGCGAGCGCAAATGTT
TCTGCAGCGAAAGGGCTTCTCCTTCGACGTCATCACAGCGGCGCTTGAGCAGACCGAGTATGCAAACGACGAAGATACAG
AAAGGGAAGCGTTACGGCAGCACGCTGAAAAGGCGCTAAGAAAATACCGATATGACGGCTCCTACGAGAGCAAGATGAAG
GTAAAACAATATTTATTCAGAAAAGGATTCTCACTGGATATGATAGACCAATTTCTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

82.51

100

0.825