Detailed information NTG0892003

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: RAS18_RS02195
• Genome accession: NZ_CP136635
• Coordinates: 445050..446198 (+)
• Length: 382 a.a.
• NCBI ID: WP_406621340.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus subsp. globigii strain Hab-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	443907..444822	445050..446198	flank	228

Gene organization within MGE regions

Location: 443907..446198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAS18_RS02190	-	443907..444822 (+)	916	Protein_398	IS3 family transposase	-
RAS18_RS02195	rapC	445050..446198 (+)	1149	WP_406621340.1	tetratricopeptide repeat protein	Regulator

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45858.08 Da
• Isoelectric Point: 4.7317

>NTDB_id=892003 RAS18_RS02195 WP_406621340.1 445050..446198(+) (rapC) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MKSEVIPSSAVGQKINEWYKYIRTFSVPDAEILKVEIEREIEHMEDDPNLLLYFSLMEFRHQLMLDYLEPLEKLKIEDQP
SLSELLRNIDSNQADLKGLLDYYVNFFRGMHEFDKREFISAITYYKQAEKRLSFVADHIERAEFYFKVAEAYYYMKQTYF
SLIHIKNAYEIYAEQETYNVRIIQCHFVFGVNLMDERRFEQAARHFELALHMAESENKAQLVGRALYNIGLCYYNQDLLE
PAIDYFERAVSIFESNDIIKSLPQAYFLITQIYYKCKNNSKAVEYHSRGYEYAKETDDIDYMVKFEFLKTLYQAQPDEQG
IEKCFYYLKNKNMYADIEDLALEVAKYYYEQKNFEMSSSYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=892003 RAS18_RS02195 WP_406621340.1 445050..446198(+) (rapC) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAAGAGCGAGGTGATTCCTTCTTCAGCAGTCGGTCAAAAAATTAACGAGTGGTATAAGTATATTCGTACGTTCAGTGT
ACCGGACGCCGAAATTCTAAAAGTCGAGATTGAACGGGAAATTGAACATATGGAAGACGATCCGAACTTGCTGCTATATT
TCTCATTAATGGAATTCCGCCACCAGCTGATGCTTGATTATCTTGAGCCGTTAGAAAAATTAAAAATAGAGGACCAGCCC
AGCTTGTCAGAATTACTGCGCAACATTGACAGCAATCAGGCTGATTTAAAAGGGCTGCTTGATTATTATGTAAACTTTTT
TCGGGGGATGCACGAATTTGATAAAAGAGAATTCATTTCAGCCATCACCTATTACAAACAGGCTGAAAAAAGACTTTCCT
TTGTAGCGGATCATATTGAAAGAGCCGAGTTCTATTTTAAAGTGGCCGAAGCTTATTACTATATGAAACAGACGTATTTC
TCACTGATCCATATCAAAAATGCCTACGAAATATATGCCGAGCAAGAAACATATAATGTGAGAATTATCCAGTGTCATTT
TGTTTTCGGAGTAAATTTGATGGATGAAAGGCGTTTCGAACAAGCTGCGCGCCATTTTGAACTCGCATTACATATGGCGG
AATCAGAAAATAAAGCACAATTGGTCGGAAGAGCGCTTTATAATATTGGGTTGTGTTATTACAACCAAGATCTTCTTGAG
CCTGCCATTGACTATTTTGAAAGAGCGGTTTCTATATTCGAAAGCAACGACATCATTAAATCCCTTCCTCAGGCATATTT
TTTGATCACGCAGATTTATTATAAATGTAAAAATAATTCTAAAGCAGTGGAATATCACAGCAGGGGCTATGAATATGCTA
AAGAAACAGATGATATTGACTACATGGTGAAATTTGAATTTTTAAAAACTCTATATCAAGCCCAGCCGGATGAACAAGGA
ATCGAAAAATGCTTTTATTACCTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGCACTAGAAGTAGCTAAATA
TTACTATGAACAAAAAAACTTCGAAATGTCATCTTCCTACTTTCTCAAAGTAGAAGAGGCCAGAAAACAAATACAAAGGA
GTGAAGGTTTATATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-66)

• Tetratricopeptide repeat (TPR_1) (224-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	85.079	100	0.851
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571