Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RAS18_RS02010 Genome accession   NZ_CP136635
Coordinates   386354..386791 (-) Length   145 a.a.
NCBI ID   WP_061571091.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 381354..391791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS01975 - 381978..382414 (+) 437 Protein_355 RDD family protein -
  RAS18_RS01980 - 382468..382797 (+) 330 WP_010787600.1 YckD family protein -
  RAS18_RS01985 - 382901..383326 (+) 426 WP_268366052.1 MarR family winged helix-turn-helix transcriptional regulator -
  RAS18_RS01990 - 383314..383655 (+) 342 WP_406621319.1 DUF3147 family protein -
  RAS18_RS01995 - 383675..384394 (+) 720 WP_150224380.1 AAA family ATPase -
  RAS18_RS02000 - 384464..385900 (+) 1437 WP_406621320.1 glycoside hydrolase family 1 protein -
  RAS18_RS02005 nin/comJ 385937..386335 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  RAS18_RS02010 nucA/comI 386354..386791 (-) 438 WP_061571091.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RAS18_RS02015 - 387013..388716 (-) 1704 WP_214917371.1 methyl-accepting chemotaxis protein -
  RAS18_RS02020 hxlB 388845..389402 (-) 558 WP_268525059.1 6-phospho-3-hexuloisomerase -
  RAS18_RS02025 hxlA 389409..390041 (-) 633 WP_239815211.1 3-hexulose-6-phosphate synthase -
  RAS18_RS02030 - 390260..390625 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15991.74 Da        Isoelectric Point: 4.1626

>NTDB_id=892002 RAS18_RS02010 WP_061571091.1 386354..386791(-) (nucA/comI) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLSDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=892002 RAS18_RS02010 WP_061571091.1 386354..386791(-) (nucA/comI) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATAGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAATATATCGCCCCGTCGGACAATCGGGGGGCTGGCTCATGGGTCGGTCATCAGCTCTCTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814